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SWISS-MODEL Homology Modelling Report

Model Building Report

This document lists the results for the homology modelling project "Q2YWY9-MurE-S-aureus" submitted to SWISS-MODEL workspace on Oct. 17, 2017, 6:19 p.m..The submitted primary amino acid sequence is given in Table T1.

If you use any results in your research, please cite the relevant publications:

Marco Biasini; Stefan Bienert; Andrew Waterhouse; Konstantin Arnold; Gabriel Studer; Tobias Schmidt; Florian Kiefer; Tiziano Gallo Cassarino; Martino Bertoni; Lorenza Bordoli; Torsten Schwede. (2014). SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information. Nucleic Acids Research (1 July 2014) 42 (W1): W252-W258; doi: 10.1093/nar/gku340.
Arnold, K., Bordoli, L., Kopp, J. and Schwede, T. (2006) The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics, 22, 195-201.
Benkert, P., Biasini, M. and Schwede, T. (2011) Toward the estimation of the absolute quality of individual protein structure models. Bioinformatics, 27, 343-350

Results

The SWISS-MODEL template library (SMTL version 2017-10-11, PDB release 2017-10-06) was searched with Blast (Altschul et al., 1997) and HHBlits (Remmert, et al., 2011) for evolutionary related structures matching the target sequence in Table T1. For details on the template search, see Materials and Methods. Overall 733 templates were found (Table T2).

Models

The following models were built (see Materials and Methods "Model Building"):

Model #01	File	Built with	Oligo-State	Ligands	GMQE	QMEAN
	PDB	ProMod3 Version 1.0.2.	homo-dimer (matching prediction)	2 x ADP: ADENOSINE-5'-DIPHOSPHATE; 4 x MG: MAGNESIUM ION; 2 x UML: URIDINE 5'DIPHOSPHO N-ACETYL MURAMOYL-L-ALANYL-D-GLUTAMYL-L-LYSINE;	0.99	0.50

QMEAN	0.50
Cβ	1.31
All Atom	1.15
Solvation	0.47
Torsion	0.15

Template	Seq Identity	Oligo-state	Found by	Method	Resolution	Seq Similarity	Range	Coverage	Description
4c12.1.A	99.39	homo-dimer	BLAST	X-ray	1.80Å	0.60	1 - 492	1.00	UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--L-LYSINE LIGASE

Ligand	Added to Model	Description
ADP	✓	ADENOSINE-5'-DIPHOSPHATE
ADP	✓	ADENOSINE-5'-DIPHOSPHATE
MG	✓	MAGNESIUM ION
MG	✓	MAGNESIUM ION
MG	✓	MAGNESIUM ION
MG	✓	MAGNESIUM ION
UML	✓	URIDINE 5'DIPHOSPHO N-ACETYL MURAMOYL-L-ALANYL-D-GLUTAMYL-L-LYSINE
UML	✓	URIDINE 5'DIPHOSPHO N-ACETYL MURAMOYL-L-ALANYL-D-GLUTAMYL-L-LYSINE
GOL	✕ - Not biologically relevant.	GLYCEROL
GOL	✕ - Not biologically relevant.	GLYCEROL
GOL	✕ - Not biologically relevant.	GLYCEROL
GOL	✕ - Not biologically relevant.	GLYCEROL

Target    MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLPANVTQVV
4c12.1.A  MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLPANVTQVV

Target    VPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLT
4c12.1.A  VPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLT

Target    KKIKEAVDAGAESMTLEVSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNN
4c12.1.A  KKIKEAVDAGAESMTLEVSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNN

Target    DDSFSEYLRTVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIMAAMIAVWSKGTSLE
4c12.1.A  DDSFSEYLRTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIMAAMIAVWSKGTSLE

Target    TIIKAVENLEPVEGRLEVLDPSLPIDLIIDYAHTADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVACRADY
4c12.1.A  TIIKAVENLEPVEGRLEVLDPSLPIDLIIDYAHTADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVACRADY

Target    VIFTPDNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRDDLIGL
4c12.1.A  VIFTPDNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRDDLIGL

Target    EAAYKKFGGGPVGQ
4c12.1.A  EAAYKKFGGGPV--

Model #02	File	Built with	Oligo-State	Ligands	GMQE	QMEAN
	PDB	ProMod3 Version 1.0.2.	MONOMER	None	0.46	-5.63

QMEAN	-5.63
Cβ	-3.18
All Atom	-3.23
Solvation	-2.02
Torsion	-4.71

Template	Seq Identity	Oligo-state	Found by	Method	Resolution	Seq Similarity	Range	Coverage	Description
1eeh.1.A	17.68	monomer	HHblits	X-ray	1.90Å	0.29	26 - 464	0.77	UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE

Ligand	Added to Model	Description
UMA	✕ - Binding site not conserved.	URIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE

Target    MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYT--VDSHKFCQSVADQGCKLVVVNKEQSLPANVTQ
1eeh.1.A  -------------------------RVMDTRMTPPGLDKLP-EAVERHTGSLN---DEWLMAADLIVASPGIA--LAHPS

Target    VVVPD--TLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPET
1eeh.1.A  LSAAADAGIEIVGDIELFCRE---AQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGL-------PA-------

Target    VSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHG-TMEAYGHAKSLLFSQLGEDLSKEKY
1eeh.1.A  -L------MLLDDECELYVLELSSFQLE--TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----A---KV

Target    VVLNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGT--YPVKSPYVGKFNISNIMAAMIAVW
1eeh.1.A  CVVNADDALTMPIRG-ADERCVSFGVNM-GDYHLNHQQGE--TW-LRV--KGEKVLNVKEMKLSGQHNYTNALAALALAD

Target    SKGTSLETIIKAVENLEPVEGRLEVLDPSLPIDLIIDY-AHTADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMG
1eeh.1.A  AAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLH-V-DGTLHLLLGG-DGKSADFS-PLA

Target    RVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKV
1eeh.1.A  RYLNGDNVRLYCFGRD-----GAQLAALRPE-----VAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQF-------

Target    PHRDDLIGLEAAYKKFGGGPVGQ
1eeh.1.A  -----------------------

Materials and Methods

Template Search

Template search with Blast and HHBlits has been performed against the SWISS-MODEL template library (SMTL, last update: 2017-10-11, last included PDB release: 2017-10-06).

The target sequence was searched with BLAST (Altschul et al., 1997) against the primary amino acid sequence contained in the SMTL. A total of 15 templates were found.

An initial HHblits profile has been built using the procedure outlined in (Remmert, et al., 2011), followed by 1 iteration of HHblits against NR20. The obtained profile has then be searched against all profiles of the SMTL. A total of 718 templates were found.

Template Selection

For each identified template, the template's quality has been predicted from features of the target-template alignment. The templates with the highest quality have then been selected for model building.

Model Building

Models are built based on the target-template alignment using ProMod3. Coordinates which are conserved between the target and the template are copied from the template to the model. Insertions and deletions are remodelled using a fragment library. Side chains are then rebuilt. Finally, the geometry of the resulting model is regularized by using a force field. In case loop modelling with ProMod3 fails, an alternative model is built with PROMOD-II (Guex, et al., 1997).

Model Quality Estimation

The global and per-residue model quality has been assessed using the QMEAN scoring function (Benkert, et al., 2011) . For improved performance, weights of the individual QMEAN terms have been trained specifically for SWISS-MODEL.

Ligand Modelling

Ligands present in the template structure are transferred by homology to the model when the following criteria are met (Gallo -Casserino, to be published): (a) The ligands are annotated as biologically relevant in the template library, (b) the ligand is in contact with the model, (c) the ligand is not clashing with the protein, (d) the residues in contact with the ligand are conserved between the target and the template. If any of these four criteria is not satisfied, a certain ligand will not be included in the model. The model summary includes information on why and which ligand has not been included.

Oligomeric State Conservation

Homo-oligomeric structure of the target protein is predicted based on the analysis of pairwise interfaces of the identified template structures. For each relevant interface between polypeptide chains (interfaces with more than 10 residue-residue interactions), the QscoreOligomer (Mariani et al., 2011) is predicted from features such as similarity to target and frequency of observing this interface in the identified templates (Kiefer, Bertoni, Biasini, to be published). The prediction is performed with a random forest regressor using these features as input parameters to predict the probability of conservation for each interface. The QscoreOligomer of the whole complex is then calculated as the weight-averaged QscoreOligomer of the interfaces. The oligomeric state of the target is predicted to be the same as in the template when QscoreOligomer is predicted to be higher or equal to 0.5.

References

Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res, 25, 3389-3402.
Remmert, M., Biegert, A., Hauser, A. and Soding, J. (2012) HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment. Nat Methods, 9, 173-175.
Guex, N. and Peitsch, M.C. (1997) SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis, 18, 2714-2723.
Sali, A. and Blundell, T.L. (1993) Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol, 234, 779-815.
Benkert, P., Biasini, M. and Schwede, T. (2011) Toward the estimation of the absolute quality of individual protein structure models. Bioinformatics, 27, 343-350.
Mariani, V., Kiefer, F., Schmidt, T., Haas, J. and Schwede, T. (2011) Assessment of template based protein structure predictions in CASP9. Proteins, 79 Suppl 10, 37-58.

Table T1:

Primary amino acid sequence for which templates were searched and models were built.

MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLPANVTQVVVPDTLRVASILAHTLFDYPS
HQLVTFGVTGTNGKTSIATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRLRGVEFDVAIFSN
LTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYPVKSPYVGKF
NISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSLPIDLIIDYAHTADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVACRADY
VIFTPDNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRDDLIGLEAAYKKFGGGPVGQ

Table T2:

Template	Seq Identity	Oligo-state	Found by	Method	Resolution	Seq Similarity	Coverage	Description
4c12.1.A	99.39	homo-dimer	BLAST	X-ray	1.80Å	0.60	1.00	UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--L-LYSINE LIGASE
4c12.1.A	98.78	homo-dimer	HHblits	X-ray	1.80Å	0.60	1.00	UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--L-LYSINE LIGASE
4bub.1.A	35.48	monomer	BLAST	X-ray	2.90Å	0.37	0.98	UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--LD-LYSINE LIGASE
4bub.2.A	35.48	monomer	BLAST	X-ray	2.90Å	0.37	0.98	UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--LD-LYSINE LIGASE
4bub.1.A	33.54	monomer	HHblits	X-ray	2.90Å	0.36	0.97	UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--LD-LYSINE LIGASE
4bub.2.A	33.54	monomer	HHblits	X-ray	2.90Å	0.36	0.97	UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--LD-LYSINE LIGASE
2xja.1.A	28.33	monomer	HHblits	X-ray	3.00Å	0.34	0.97	UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE
2wtz.1.A	28.33	monomer	HHblits	X-ray	3.00Å	0.34	0.97	UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE
1e8c.1.A	29.41	monomer	HHblits	X-ray	2.00Å	0.35	0.96	UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE
2xja.1.A	29.53	monomer	BLAST	X-ray	3.00Å	0.36	0.90	UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE
2wtz.1.A	29.53	monomer	BLAST	X-ray	3.00Å	0.36	0.90	UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE
1e8c.1.A	32.42	monomer	BLAST	X-ray	2.00Å	0.36	0.89	UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE
4cvl.1.A	22.77	monomer	HHblits	X-ray	2.98Å	0.31	0.86	UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
4cvm.1.A	22.77	monomer	HHblits	X-ray	2.06Å	0.31	0.86	UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D- ALANINE LIGASE
1gg4.1.A	23.22	monomer	HHblits	X-ray	2.30Å	0.31	0.85	UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,6-DIAMINOPIMELATE-D-ALANYL-D-ALANYL LIGASE
4ziy.1.A	21.80	monomer	HHblits	X-ray	1.85Å	0.31	0.85	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
4qf5.1.A	22.09	monomer	HHblits	X-ray	2.80Å	0.31	0.85	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
4qdi.1.A	22.09	monomer	HHblits	X-ray	1.80Å	0.31	0.85	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
2am2.1.A	20.80	monomer	HHblits	X-ray	2.80Å	0.30	0.86	UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine ligase, MurF protein
3zm5.1.A	20.95	monomer	HHblits	X-ray	2.94Å	0.30	0.85	UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
3zl8.1.A	20.71	monomer	HHblits	X-ray	1.65Å	0.30	0.80	UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
3lk7.1.A	19.69	monomer	HHblits	X-ray	1.50Å	0.30	0.78	UDP-N-acetylmuramoylalanine--D-glutamate ligase
1uag.1.A	17.68	monomer	HHblits	X-ray	1.95Å	0.29	0.77	UDP-N-ACETYLMURAMOYL-L-ALANINE/:D-GLUTAMATE LIGASE
1eeh.1.A	17.68	monomer	HHblits	X-ray	1.90Å	0.29	0.77	UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE
2uag.1.A	17.68	monomer	HHblits	X-ray	1.70Å	0.29	0.77	PROTEIN (UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE)
1e0d.1.A	17.68	monomer	HHblits	X-ray	2.40Å	0.29	0.77	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
5a5e.1.A	17.68	monomer	HHblits	X-ray	1.84Å	0.29	0.77	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
5a5f.1.A	17.68	monomer	HHblits	X-ray	1.90Å	0.29	0.77	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
2y67.1.A	17.68	monomer	HHblits	X-ray	1.85Å	0.29	0.77	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
2xpc.1.A	17.72	monomer	HHblits	X-ray	1.49Å	0.29	0.77	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
1p3d.1.A	18.18	monomer	HHblits	X-ray	1.70Å	0.30	0.73	UDP-N-acetylmuramate--alanine ligase
1gqq.1.A	18.18	homo-dimer	HHblits	X-ray	3.10Å	0.30	0.73	UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE
1gqq.1.B	18.18	homo-dimer	HHblits	X-ray	3.10Å	0.30	0.73	UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE
1p31.1.A	18.18	monomer	HHblits	X-ray	1.85Å	0.30	0.73	UDP-N-acetylmuramate--alanine ligase
1gqy.1.B	18.18	homo-dimer	HHblits	X-ray	1.80Å	0.30	0.73	UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE
1gqy.1.A	18.18	homo-dimer	HHblits	X-ray	1.80Å	0.30	0.73	UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE
4buc.1.A	16.48	monomer	HHblits	X-ray	2.17Å	0.29	0.74	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
4buc.2.A	16.48	monomer	HHblits	X-ray	2.17Å	0.29	0.74	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
2vor.1.A	18.08	monomer	HHblits	X-ray	2.30Å	0.29	0.72	FOLYLPOLYGLUTAMATE SYNTHASE PROTEIN FOLC
1j6u.1.A	19.55	monomer	HHblits	X-ray	2.30Å	0.29	0.71	UDP-N-acetylmuramate-alanine ligase MurC
1o5z.1.A	19.20	monomer	HHblits	X-ray	2.10Å	0.28	0.71	folylpolyglutamate synthase/dihydrofolate synthase
3hn7.1.A	18.31	monomer	HHblits	X-ray	1.65Å	0.30	0.70	UDP-N-acetylmuramate-L-alanine ligase
2gcb.1.A	18.73	monomer	HHblits	X-ray	2.30Å	0.28	0.70	Folylpolyglutamate synthase
2gc5.1.A	19.08	monomer	HHblits	X-ray	1.85Å	0.29	0.70	Folylpolyglutamate synthase
2gca.1.A	19.08	monomer	HHblits	X-ray	2.40Å	0.29	0.70	Folylpolyglutamate synthase
1fgs.1.A	19.13	monomer	HHblits	X-ray	2.40Å	0.29	0.70	FOLYLPOLYGLUTAMATE SYNTHETASE
1jbw.1.A	19.13	monomer	HHblits	X-ray	1.85Å	0.29	0.70	FOLYLPOLYGLUTAMATE SYNTHASE
1jbv.1.A	19.13	monomer	HHblits	X-ray	1.95Å	0.29	0.70	FOLYLPOLYGLUTAMATE SYNTHASE
2gc6.1.A	19.13	monomer	HHblits	X-ray	1.90Å	0.29	0.70	Folylpolyglutamate synthase
1w7k.1.A	18.93	monomer	HHblits	X-ray	2.10Å	0.29	0.68	FOLC BIFUNCTIONAL PROTEIN
1w78.1.A	18.93	monomer	HHblits	X-ray	1.82Å	0.29	0.68	FOLC BIFUNCTIONAL PROTEIN
3nrs.1.A	19.94	monomer	HHblits	X-ray	1.80Å	0.30	0.67	Dihydrofolate:folylpolyglutamate synthetase
3pyz.1.A	19.94	monomer	HHblits	X-ray	2.10Å	0.30	0.67	Bifunctional folylpolyglutamate synthase/dihydrofolate synthase
2f00.1.A	19.15	homo-dimer	HHblits	X-ray	2.50Å	0.29	0.67	UDP-N-acetylmuramate--L-alanine ligase
4hv4.1.A	17.63	monomer	HHblits	X-ray	2.25Å	0.29	0.67	UDP-N-acetylmuramate--L-alanine ligase
4hv4.2.A	17.63	monomer	HHblits	X-ray	2.25Å	0.29	0.67	UDP-N-acetylmuramate--L-alanine ligase
4qf5.1.A	30.82	monomer	BLAST	X-ray	2.80Å	0.34	0.62	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
4qdi.1.A	30.82	monomer	BLAST	X-ray	1.80Å	0.34	0.62	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
4ziy.1.A	30.49	monomer	BLAST	X-ray	1.85Å	0.34	0.62	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
3zm5.1.A	27.45	monomer	BLAST	X-ray	2.94Å	0.33	0.62	UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
2am2.1.A	27.45	monomer	BLAST	X-ray	2.80Å	0.33	0.62	UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine ligase, MurF protein
1gg4.1.A	29.66	monomer	BLAST	X-ray	2.30Å	0.35	0.59	UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,6-DIAMINOPIMELATE-D-ALANYL-D-ALANYL LIGASE
4cvl.1.A	29.17	monomer	BLAST	X-ray	2.98Å	0.34	0.58	UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
4cvm.1.A	29.17	monomer	BLAST	X-ray	2.06Å	0.34	0.58	UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D- ALANINE LIGASE
3lk7.1.A	30.53	monomer	BLAST	X-ray	1.50Å	0.36	0.53	UDP-N-acetylmuramoylalanine--D-glutamate ligase
5vvw.1.A	18.14	homo-tetramer	HHblits	X-ray	2.30Å	0.29	0.48	UDP-N-acetylmuramate--L-alanine ligase
3eag.1.A	18.87	homo-dimer	HHblits	X-ray	2.55Å	0.29	0.43	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
3eag.1.B	18.87	homo-dimer	HHblits	X-ray	2.55Å	0.29	0.43	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
3mvn.1.A	22.13	monomer	HHblits	X-ray	1.90Å	0.31	0.25	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-medo-diaminopimelate ligase
2obn.1.A	12.50	homo-dimer	HHblits	X-ray	2.30Å	0.27	0.24	Hypothetical protein
2obn.1.B	12.50	homo-dimer	HHblits	X-ray	2.30Å	0.27	0.24	Hypothetical protein
1kzh.1.A	11.50	homo-dimer	HHblits	X-ray	2.55Å	0.25	0.23	phosphofructokinase
1kzh.1.B	11.50	homo-dimer	HHblits	X-ray	2.55Å	0.25	0.23	phosphofructokinase
2f48.1.B	11.50	homo-dimer	HHblits	X-ray	2.11Å	0.25	0.23	diphosphate--fructose-6-phosphate 1-phosphotransferase
2hly.1.A	18.56	monomer	HHblits	X-ray	1.60Å	0.28	0.20	Hypothetical protein Atu2299
2lci.1.A	13.64	monomer	HHblits	NMR	NA	0.30	0.18	Protein OR36
2lrh.1.A	13.64	monomer	HHblits	NMR	NA	0.30	0.18	De novo designed protein
4j29.1.A	11.24	homo-dimer	HHblits	X-ray	2.10Å	0.29	0.18	Engineered Protein OR258
5gaj.1.A	11.24	monomer	HHblits	NMR	NA	0.29	0.18	DE NOVO DESIGNED PROTEIN OR258
2lr0.1.A	13.64	monomer	HHblits	NMR	NA	0.29	0.18	P-loop ntpase fold
2mr5.1.A	10.11	monomer	HHblits	NMR	NA	0.27	0.18	De novo designed Protein OR457
2mr6.1.A	10.11	monomer	HHblits	NMR	NA	0.27	0.18	De novo designed Protein OR462
2l69.1.A	10.34	monomer	HHblits	NMR	NA	0.27	0.18	Rossmann 2x3 fold protein
2el2.1.A	17.28	homo-dimer	HHblits	X-ray	2.30Å	0.29	0.16	diphthine synthase
2el2.1.B	17.28	homo-dimer	HHblits	X-ray	2.30Å	0.29	0.16	diphthine synthase
2p6k.1.A	15.85	homo-dimer	HHblits	X-ray	2.10Å	0.28	0.17	diphthine synthase
2p6k.1.B	15.85	homo-dimer	HHblits	X-ray	2.10Å	0.28	0.17	diphthine synthase
2el3.1.A	15.85	homo-dimer	HHblits	X-ray	2.40Å	0.28	0.17	diphthine synthase
2el3.1.B	15.85	homo-dimer	HHblits	X-ray	2.40Å	0.28	0.17	diphthine synthase
2emu.1.A	17.28	homo-dimer	HHblits	X-ray	2.20Å	0.29	0.16	diphthine synthase
2emu.1.B	17.28	homo-dimer	HHblits	X-ray	2.20Å	0.29	0.16	diphthine synthase
2e8r.1.A	17.28	homo-dimer	HHblits	X-ray	2.00Å	0.29	0.16	Probable diphthine synthase
2e8r.1.B	17.28	homo-dimer	HHblits	X-ray	2.00Å	0.29	0.16	Probable diphthine synthase
2ejk.1.A	17.28	homo-dimer	HHblits	X-ray	2.40Å	0.29	0.16	diphthine synthase
2ejk.1.B	17.28	homo-dimer	HHblits	X-ray	2.40Å	0.29	0.16	diphthine synthase
2p2x.1.A	17.28	homo-dimer	HHblits	X-ray	2.90Å	0.29	0.16	Probable diphthine synthase
2p2x.1.B	17.28	homo-dimer	HHblits	X-ray	2.90Å	0.29	0.16	Probable diphthine synthase
2dv7.1.A	17.28	homo-dimer	HHblits	X-ray	2.30Å	0.29	0.16	diphthine synthase
2dv7.1.B	17.28	homo-dimer	HHblits	X-ray	2.30Å	0.29	0.16	diphthine synthase
2p6l.1.A	17.28	homo-dimer	HHblits	X-ray	2.00Å	0.29	0.16	diphthine synthase
2p6l.1.B	17.28	homo-dimer	HHblits	X-ray	2.00Å	0.29	0.16	diphthine synthase
1wng.1.A	17.28	homo-dimer	HHblits	X-ray	2.10Å	0.29	0.16	Probable diphthine synthase
1wng.1.B	17.28	homo-dimer	HHblits	X-ray	2.10Å	0.29	0.16	Probable diphthine synthase
2egb.1.A	17.28	homo-dimer	HHblits	X-ray	1.90Å	0.29	0.16	diphthine synthase
2egb.1.B	17.28	homo-dimer	HHblits	X-ray	1.90Å	0.29	0.16	diphthine synthase
2owv.1.A	17.28	homo-dimer	HHblits	X-ray	2.80Å	0.29	0.16	diphthine synthase
2owv.1.B	17.28	homo-dimer	HHblits	X-ray	2.80Å	0.29	0.16	diphthine synthase
2pb6.1.A	17.28	homo-dimer	HHblits	X-ray	2.20Å	0.29	0.16	Probable diphthine synthase
2pb6.1.B	17.28	homo-dimer	HHblits	X-ray	2.20Å	0.29	0.16	Probable diphthine synthase
2owg.1.A	17.28	homo-dimer	HHblits	X-ray	2.10Å	0.29	0.16	diphthine synthase
2owg.1.B	17.28	homo-dimer	HHblits	X-ray	2.10Å	0.29	0.16	diphthine synthase
2e4r.1.A	17.28	homo-dimer	HHblits	X-ray	2.20Å	0.29	0.16	diphthine synthase
2e4r.1.B	17.28	homo-dimer	HHblits	X-ray	2.20Å	0.29	0.16	diphthine synthase
2eka.1.A	17.28	homo-dimer	HHblits	X-ray	2.30Å	0.29	0.16	diphthine synthase
2eka.1.B	17.28	homo-dimer	HHblits	X-ray	2.30Å	0.29	0.16	diphthine synthase
2ejz.1.A	17.28	homo-dimer	HHblits	X-ray	1.85Å	0.29	0.16	diphthine synthase
2ejz.1.B	17.28	homo-dimer	HHblits	X-ray	1.85Å	0.29	0.16	diphthine synthase
2pcg.1.A	17.28	homo-dimer	HHblits	X-ray	2.20Å	0.29	0.16	Probable diphthine synthase
2pcg.1.B	17.28	homo-dimer	HHblits	X-ray	2.20Å	0.29	0.16	Probable diphthine synthase
2e17.1.A	17.28	homo-dimer	HHblits	X-ray	1.90Å	0.29	0.16	Probable diphthine synthase
2e17.1.B	17.28	homo-dimer	HHblits	X-ray	1.90Å	0.29	0.16	Probable diphthine synthase
2pci.1.A	17.28	homo-dimer	HHblits	X-ray	2.00Å	0.29	0.16	Probable diphthine synthase
2pci.1.B	17.28	homo-dimer	HHblits	X-ray	2.00Å	0.29	0.16	Probable diphthine synthase
2hux.1.B	17.28	homo-dimer	HHblits	X-ray	2.40Å	0.29	0.16	Probable diphthine synthase
2pb5.1.A	17.28	homo-dimer	HHblits	X-ray	2.10Å	0.29	0.16	diphthine synthase
2pb5.1.B	17.28	homo-dimer	HHblits	X-ray	2.10Å	0.29	0.16	diphthine synthase
2e7r.1.A	17.28	homo-dimer	HHblits	X-ray	1.80Å	0.29	0.16	diphthine synthase
2e7r.1.B	17.28	homo-dimer	HHblits	X-ray	1.80Å	0.29	0.16	diphthine synthase
2huv.1.A	14.63	homo-dimer	HHblits	X-ray	2.10Å	0.27	0.17	Probable diphthine synthase
2huv.1.B	14.63	homo-dimer	HHblits	X-ray	2.10Å	0.27	0.17	Probable diphthine synthase
2owk.1.A	14.63	homo-dimer	HHblits	X-ray	2.00Å	0.27	0.17	diphthine synthase
2owk.1.B	14.63	homo-dimer	HHblits	X-ray	2.00Å	0.27	0.17	diphthine synthase
2el1.1.A	16.05	homo-dimer	HHblits	X-ray	2.20Å	0.28	0.16	diphthine synthase
2el1.1.B	16.05	homo-dimer	HHblits	X-ray	2.20Å	0.28	0.16	diphthine synthase
2dxv.1.A	16.05	homo-dimer	HHblits	X-ray	1.90Å	0.28	0.16	diphthine synthase
2dxv.1.B	16.05	homo-dimer	HHblits	X-ray	1.90Å	0.28	0.16	diphthine synthase
2egs.1.A	16.05	homo-dimer	HHblits	X-ray	1.90Å	0.28	0.16	diphthine synthase
2egs.1.B	16.05	homo-dimer	HHblits	X-ray	1.90Å	0.28	0.16	diphthine synthase
2ejj.1.A	16.05	homo-dimer	HHblits	X-ray	2.10Å	0.28	0.16	diphthine synthase
2ejj.1.B	16.05	homo-dimer	HHblits	X-ray	2.10Å	0.28	0.16	diphthine synthase
2e4n.1.A	16.05	homo-dimer	HHblits	X-ray	1.80Å	0.28	0.16	diphthine synthase
2e4n.1.B	16.05	homo-dimer	HHblits	X-ray	1.80Å	0.28	0.16	diphthine synthase
2e16.1.A	16.05	homo-dimer	HHblits	X-ray	2.00Å	0.28	0.16	Probable diphthine synthase
2e16.1.B	16.05	homo-dimer	HHblits	X-ray	2.00Å	0.28	0.16	Probable diphthine synthase
2eh4.1.A	16.05	homo-dimer	HHblits	X-ray	2.10Å	0.28	0.16	diphthine synthase
2eh4.1.B	16.05	homo-dimer	HHblits	X-ray	2.10Å	0.28	0.16	diphthine synthase
2pck.1.A	16.05	homo-dimer	HHblits	X-ray	2.60Å	0.28	0.16	diphthine synthase
2pck.1.B	16.05	homo-dimer	HHblits	X-ray	2.60Å	0.28	0.16	diphthine synthase
2p6i.1.A	16.05	homo-dimer	HHblits	X-ray	2.20Å	0.28	0.16	diphthine synthase
2p6i.1.B	16.05	homo-dimer	HHblits	X-ray	2.20Å	0.28	0.16	diphthine synthase
2p5f.1.A	16.05	homo-dimer	HHblits	X-ray	2.50Å	0.28	0.16	diphthine synthase
2p5f.1.B	16.05	homo-dimer	HHblits	X-ray	2.50Å	0.28	0.16	diphthine synthase
2owu.1.A	16.05	homo-dimer	HHblits	X-ray	2.20Å	0.28	0.16	diphthine synthase
2owu.1.B	16.05	homo-dimer	HHblits	X-ray	2.20Å	0.28	0.16	diphthine synthase
2p9d.1.A	16.05	homo-dimer	HHblits	X-ray	2.10Å	0.28	0.16	diphthine synthase
2p9d.1.B	16.05	homo-dimer	HHblits	X-ray	2.10Å	0.28	0.16	diphthine synthase
2hut.1.A	16.05	homo-dimer	HHblits	X-ray	2.40Å	0.28	0.16	Probable diphthine synthase
2hut.1.B	16.05	homo-dimer	HHblits	X-ray	2.40Å	0.28	0.16	Probable diphthine synthase
2ek3.1.A	16.05	homo-dimer	HHblits	X-ray	2.80Å	0.28	0.16	diphthine synthase
2ek3.1.B	16.05	homo-dimer	HHblits	X-ray	2.80Å	0.28	0.16	diphthine synthase
2eeq.1.B	16.25	homo-dimer	HHblits	X-ray	2.50Å	0.28	0.16	diphthine synthase
2eeq.1.A	16.25	homo-dimer	HHblits	X-ray	2.50Å	0.28	0.16	diphthine synthase
3nxs.1.A	14.81	homo-dimer	HHblits	X-ray	2.30Å	0.26	0.16	LAO/AO transport system ATPase
3md0.1.A	17.50	homo-dimer	HHblits	X-ray	2.45Å	0.27	0.16	Arginine/ornithine transport system ATPase
5l3q.1.A	11.69	hetero-oligomer	HHblits	X-ray	3.20Å	0.29	0.16	Signal recognition particle 54 kDa protein
2j37.1.G	11.69	hetero-oligomer	HHblits	EM	8.00Å	0.28	0.16	SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN (SRP54)
4ue5.1.D	11.69	hetero-oligomer	HHblits	EM	9.00Å	0.28	0.16	SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN
3jaj.45.A	11.84	monomer	HHblits	EM	NA	0.29	0.15	SRP54
3jan.45.A	11.84	monomer	HHblits	EM	NA	0.29	0.15	SRP54
1j8y.1.A	10.53	monomer	HHblits	X-ray	2.00Å	0.28	0.15	SIGNAL RECOGNITION 54 KDA PROTEIN
3dm5.1.A	9.21	homo-tetramer	HHblits	X-ray	2.51Å	0.27	0.15	Signal recognition 54 kDa protein
2ffh.1.A	10.53	monomer	HHblits	X-ray	3.20Å	0.26	0.15	PROTEIN (FFH)
3qw4.1.B	10.39	homo-tetramer	HHblits	X-ray	3.00Å	0.25	0.16	UMP synthase
3qw4.1.A	10.39	homo-tetramer	HHblits	X-ray	3.00Å	0.25	0.16	UMP synthase
3jd5.1.W	25.42	hetero-oligomer	HHblits	EM	NA	0.31	0.12	28S ribosomal protein S29, mitochondrial
4c0b.1.A	16.67	hetero-oligomer	HHblits	X-ray	2.77Å	0.29	0.11	MRNA CLEAVAGE AND POLYADENYLATION FACTOR CLP1
2npi.1.A	16.67	hetero-oligomer	HHblits	X-ray	2.95Å	0.29	0.11	Protein CLP1
2oze.1.A	16.67	homo-dimer	HHblits	X-ray	1.83Å	0.28	0.11	Orf delta'
1rz3.1.A	16.98	monomer	HHblits	X-ray	1.90Å	0.29	0.11	hypothetical protein RBSTP0775
2hcb.1.A	15.09	homo-tetramer	HHblits	X-ray	3.51Å	0.29	0.11	Chromosomal replication initiator protein dnaA
2hcb.1.B	15.09	homo-tetramer	HHblits	X-ray	3.51Å	0.29	0.11	Chromosomal replication initiator protein dnaA
2hcb.1.C	15.09	homo-tetramer	HHblits	X-ray	3.51Å	0.29	0.11	Chromosomal replication initiator protein dnaA
2hcb.1.D	15.09	homo-tetramer	HHblits	X-ray	3.51Å	0.29	0.11	Chromosomal replication initiator protein dnaA
3r8f.1.A	11.11	homo-tetramer	HHblits	X-ray	3.37Å	0.26	0.11	Chromosomal replication initiator protein dnaA
1l8q.1.A	11.11	monomer	HHblits	X-ray	2.70Å	0.26	0.11	Chromosomal replication initiator protein dnaA
5mrc.62.A	17.65	monomer	HHblits	EM	NA	0.30	0.10	mS29
3cio.1.A	13.73	homo-dimer	HHblits	X-ray	2.50Å	0.29	0.10	Tyrosine-protein kinase etk
3cio.1.B	13.73	homo-dimer	HHblits	X-ray	2.50Å	0.29	0.10	Tyrosine-protein kinase etk
4jlv.1.A	7.69	monomer	HHblits	X-ray	2.20Å	0.27	0.11	C-terminal fragment of Membrane protein CapA1, Putative uncharacterized protein capB1
4jmp.1.A	11.76	monomer	HHblits	X-ray	1.30Å	0.28	0.10	C-terminal fragment of CapA, Protein tyrosine kinase
3bfv.1.A	11.76	monomer	HHblits	X-ray	1.80Å	0.28	0.10	Membrane protein CapA1, Protein tyrosine kinase
2ved.1.A	9.80	homo-octamer	HHblits	X-ray	2.60Å	0.27	0.10	MEMBRANE PROTEIN CAPA1, PROTEIN TYROSINE KINASE
3sc3.1.A	11.76	homo-dimer	HHblits	X-ray	3.00Å	0.26	0.10	Putative DNA replication regulator Hda
3sc3.1.B	11.76	homo-dimer	HHblits	X-ray	3.00Å	0.26	0.10	Putative DNA replication regulator Hda
1sq5.1.A	10.20	homo-dimer	HHblits	X-ray	2.20Å	0.28	0.10	Pantothenate kinase
3upu.1.A	16.67	monomer	HHblits	X-ray	3.30Å	0.29	0.10	ATP-dependent DNA helicase dda
3upu.3.A	16.67	monomer	HHblits	X-ray	3.30Å	0.29	0.10	ATP-dependent DNA helicase dda
4l16.1.A	19.15	monomer	HHblits	X-ray	2.80Å	0.29	0.10	Fidgetin-like protein 1
4l15.1.A	19.15	monomer	HHblits	X-ray	2.60Å	0.29	0.10	Fidgetin-like protein 1
3bos.1.A	13.33	homo-dimer	HHblits	X-ray	1.75Å	0.27	0.09	Putative DNA replication factor
3bos.1.B	13.33	homo-dimer	HHblits	X-ray	1.75Å	0.27	0.09	Putative DNA replication factor
1xjc.1.A	15.38	monomer	HHblits	X-ray	2.10Å	0.27	0.08	MobB protein homolog
2p67.1.A	22.22	homo-dimer	HHblits	X-ray	1.80Å	0.32	0.07	LAO/AO transport system kinase
1jbk.1.A	15.00	monomer	HHblits	X-ray	1.80Å	0.23	0.08	CLPB PROTEIN
1ufq.1.A	21.62	homo-tetramer	HHblits	X-ray	2.50Å	0.29	0.07	Uridine-cytidine kinase 2
1uej.1.A	21.62	monomer	HHblits	X-ray	2.61Å	0.29	0.07	Uridine-cytidine kinase 2
1ufq.1.B	21.62	homo-tetramer	HHblits	X-ray	2.50Å	0.29	0.07	Uridine-cytidine kinase 2
1uj2.1.A	21.62	homo-tetramer	HHblits	X-ray	1.80Å	0.29	0.07	Uridine-cytidine kinase 2
2g0t.1.A	25.00	homo-dimer	HHblits	X-ray	2.67Å	0.31	0.07	conserved hypothetical protein
3syn.2.A	22.22	hetero-oligomer	HHblits	X-ray	3.06Å	0.31	0.07	Flagellar biosynthesis protein flhF
2px0.1.B	22.22	homo-dimer	HHblits	X-ray	3.00Å	0.31	0.07	Flagellar biosynthesis protein flhF
2px0.3.B	22.22	homo-dimer	HHblits	X-ray	3.00Å	0.31	0.07	Flagellar biosynthesis protein flhF
2px0.4.A	22.22	homo-dimer	HHblits	X-ray	3.00Å	0.31	0.07	Flagellar biosynthesis protein flhF
2px3.1.A	22.22	homo-dimer	HHblits	X-ray	3.20Å	0.31	0.07	Flagellar biosynthesis protein flhF
2px0.1.A	22.22	homo-dimer	HHblits	X-ray	3.00Å	0.31	0.07	Flagellar biosynthesis protein flhF
4f7w.1.B	13.89	homo-dimer	HHblits	X-ray	2.10Å	0.30	0.07	Pantothenate kinase
4f7w.1.A	13.89	homo-dimer	HHblits	X-ray	2.10Å	0.30	0.07	Pantothenate kinase
4f7w.3.A	13.89	homo-dimer	HHblits	X-ray	2.10Å	0.30	0.07	Pantothenate kinase
4f7w.4.B	13.89	homo-dimer	HHblits	X-ray	2.10Å	0.30	0.07	Pantothenate kinase
4ne2.2.A	13.89	homo-dimer	HHblits	X-ray	1.90Å	0.30	0.07	Pantothenate kinase
3tk1.1.A	19.44	homo-dimer	HHblits	X-ray	2.40Å	0.30	0.07	Membrane ATPase/protein kinase
5l3w.1.A	13.51	monomer	HHblits	X-ray	2.40Å	0.28	0.07	Signal recognition particle receptor FtsY
3ndb.1.B	19.44	hetero-oligomer	HHblits	X-ray	3.00Å	0.30	0.07	Signal recognition 54 kDa protein
2v3c.1.B	19.44	hetero-oligomer	HHblits	X-ray	2.50Å	0.30	0.07	SIGNAL RECOGNITION 54 KDA PROTEIN
2v3c.2.B	19.44	hetero-oligomer	HHblits	X-ray	2.50Å	0.30	0.07	SIGNAL RECOGNITION 54 KDA PROTEIN
5l3s.1.B	16.67	hetero-oligomer	HHblits	X-ray	1.90Å	0.29	0.07	Signal recognition particle receptor FtsY
5l3s.2.B	16.67	hetero-oligomer	HHblits	X-ray	1.90Å	0.29	0.07	Signal recognition particle receptor FtsY
5l3s.3.B	16.67	hetero-oligomer	HHblits	X-ray	1.90Å	0.29	0.07	Signal recognition particle receptor FtsY
5l3s.4.B	16.67	hetero-oligomer	HHblits	X-ray	1.90Å	0.29	0.07	Signal recognition particle receptor FtsY
5l3s.1.A	16.67	hetero-oligomer	HHblits	X-ray	1.90Å	0.29	0.07	Signal recognition particle 54 kDa protein
5l3s.4.A	16.67	hetero-oligomer	HHblits	X-ray	1.90Å	0.29	0.07	Signal recognition particle 54 kDa protein
3fkq.1.A	16.67	homo-dimer	HHblits	X-ray	2.10Å	0.29	0.07	NtrC-like two-domain protein
2cnw.1.B	22.86	hetero-oligomer	HHblits	X-ray	2.39Å	0.31	0.07	CELL DIVISION PROTEIN FTSY
2iyl.1.A	22.86	monomer	HHblits	X-ray	2.10Å	0.31	0.07	CELL DIVISION PROTEIN FTSY
2cnw.2.B	22.86	hetero-oligomer	HHblits	X-ray	2.39Å	0.31	0.07	CELL DIVISION PROTEIN FTSY
4oyh.1.A	25.00	homo-dimer	HHblits	X-ray	2.41Å	0.29	0.07	Molybdopterin-guanine dinucleotide biosynthesis protein B
4oyh.2.A	25.00	homo-dimer	HHblits	X-ray	2.41Å	0.29	0.07	Molybdopterin-guanine dinucleotide biosynthesis protein B
4oyh.2.B	25.00	homo-dimer	HHblits	X-ray	2.41Å	0.29	0.07	Molybdopterin-guanine dinucleotide biosynthesis protein B
4oyh.3.A	25.00	homo-dimer	HHblits	X-ray	2.41Å	0.29	0.07	Molybdopterin-guanine dinucleotide biosynthesis protein B
4oyh.3.B	25.00	homo-dimer	HHblits	X-ray	2.41Å	0.29	0.07	Molybdopterin-guanine dinucleotide biosynthesis protein B
4nkr.1.A	25.00	homo-dimer	HHblits	X-ray	2.41Å	0.29	0.07	Molybdopterin-guanine dinucleotide biosynthesis protein B
4nkr.2.A	25.00	homo-dimer	HHblits	X-ray	2.41Å	0.29	0.07	Molybdopterin-guanine dinucleotide biosynthesis protein B
4nkr.2.B	25.00	homo-dimer	HHblits	X-ray	2.41Å	0.29	0.07	Molybdopterin-guanine dinucleotide biosynthesis protein B
4nkr.3.A	25.00	homo-dimer	HHblits	X-ray	2.41Å	0.29	0.07	Molybdopterin-guanine dinucleotide biosynthesis protein B
4nkr.3.B	25.00	homo-dimer	HHblits	X-ray	2.41Å	0.29	0.07	Molybdopterin-guanine dinucleotide biosynthesis protein B
2og2.1.A	13.51	monomer	HHblits	X-ray	2.00Å	0.27	0.07	Putative signal recognition particle receptor
1p9n.1.A	7.89	homo-dimer	HHblits	X-ray	2.80Å	0.25	0.08	Molybdopterin-guanine dinucleotide biosynthesis protein B
1p9n.1.B	7.89	homo-dimer	HHblits	X-ray	2.80Å	0.25	0.08	Molybdopterin-guanine dinucleotide biosynthesis protein B
1np6.1.A	7.89	homo-dimer	HHblits	X-ray	1.90Å	0.25	0.08	Molybdopterin-guanine dinucleotide biosynthesis protein B
1np6.1.B	7.89	homo-dimer	HHblits	X-ray	1.90Å	0.25	0.08	Molybdopterin-guanine dinucleotide biosynthesis protein B
4c7o.1.A	16.67	hetero-oligomer	HHblits	X-ray	2.60Å	0.29	0.07	SIGNAL RECOGNITION PARTICLE PROTEIN
4c7o.2.A	16.67	hetero-oligomer	HHblits	X-ray	2.60Å	0.29	0.07	SIGNAL RECOGNITION PARTICLE PROTEIN
3zq6.1.A	29.41	homo-dimer	HHblits	X-ray	2.11Å	0.33	0.07	PUTATIVE ARSENICAL PUMP-DRIVING ATPASE
3zq6.1.B	29.41	homo-dimer	HHblits	X-ray	2.11Å	0.33	0.07	PUTATIVE ARSENICAL PUMP-DRIVING ATPASE
3zq6.2.A	29.41	homo-dimer	HHblits	X-ray	2.11Å	0.33	0.07	PUTATIVE ARSENICAL PUMP-DRIVING ATPASE
3zq6.2.B	29.41	homo-dimer	HHblits	X-ray	2.11Å	0.33	0.07	PUTATIVE ARSENICAL PUMP-DRIVING ATPASE
4pfs.1.A	13.51	monomer	HHblits	X-ray	2.30Å	0.26	0.07	Cobyrinic Acid a,c-diamide synthase
4pfs.2.A	13.51	monomer	HHblits	X-ray	2.30Å	0.26	0.07	Cobyrinic Acid a,c-diamide synthase
1j8m.1.A	20.00	monomer	HHblits	X-ray	2.00Å	0.30	0.07	SIGNAL RECOGNITION 54 KDA PROTEIN
2j7p.1.A	17.14	hetero-oligomer	HHblits	X-ray	1.97Å	0.30	0.07	SIGNAL RECOGNITION PARTICLE PROTEIN
3ng1.1.A	17.14	monomer	HHblits	X-ray	2.30Å	0.30	0.07	SIGNAL SEQUENCE RECOGNITION PROTEIN FFH
2cnw.1.A	17.14	hetero-oligomer	HHblits	X-ray	2.39Å	0.30	0.07	SIGNAL RECOGNITION PARTICLE PROTEIN
2cnw.3.A	17.14	hetero-oligomer	HHblits	X-ray	2.39Å	0.30	0.07	SIGNAL RECOGNITION PARTICLE PROTEIN
2xkv.1.A	17.14	hetero-oligomer	HHblits	EM	13.50Å	0.30	0.07	SIGNAL RECOGNITION PARTICLE PROTEIN
5l3r.1.A	17.14	hetero-oligomer	HHblits	X-ray	2.50Å	0.30	0.07	Signal recognition particle 54 kDa protein, chloroplastic
3of5.1.A	29.41	homo-dimer	HHblits	X-ray	1.52Å	0.32	0.07	Dethiobiotin synthetase
1zu5.1.A	22.86	monomer	HHblits	X-ray	2.40Å	0.30	0.07	ftsY
1zu4.1.A	22.86	monomer	HHblits	X-ray	1.95Å	0.30	0.07	ftsY
3fmi.1.A	26.47	homo-dimer	HHblits	X-ray	2.18Å	0.32	0.07	Dethiobiotin synthetase
3fmi.1.B	26.47	homo-dimer	HHblits	X-ray	2.18Å	0.32	0.07	Dethiobiotin synthetase
3fmf.2.A	26.47	homo-dimer	HHblits	X-ray	2.05Å	0.32	0.07	Dethiobiotin synthetase
5j1j.1.A	26.47	homo-dimer	HHblits	X-ray	1.55Å	0.32	0.07	Site-determining protein
5j1j.1.B	26.47	homo-dimer	HHblits	X-ray	1.55Å	0.32	0.07	Site-determining protein
5jvf.1.A	26.47	monomer	HHblits	X-ray	1.66Å	0.32	0.07	Site-determining protein
4rz2.1.A	25.71	monomer	HHblits	X-ray	2.80Å	0.30	0.07	Site-determining protein
2q9a.1.A	23.53	monomer	HHblits	X-ray	2.24Å	0.32	0.07	Cell division protein ftsY
2q9a.2.A	23.53	monomer	HHblits	X-ray	2.24Å	0.32	0.07	Cell division protein ftsY
2j7p.1.B	23.53	hetero-oligomer	HHblits	X-ray	1.97Å	0.32	0.07	CELL DIVISION PROTEIN FTSY
1okk.1.B	23.53	hetero-oligomer	HHblits	X-ray	2.05Å	0.32	0.07	CELL DIVISION PROTEIN FTSY
2xkv.1.D	23.53	hetero-oligomer	HHblits	EM	13.50Å	0.32	0.07	CELL DIVISION PROTEIN FTSY
5l3v.1.A	17.14	monomer	HHblits	X-ray	2.30Å	0.29	0.07	Signal recognition particle 54 kDa protein
5l3v.2.A	17.14	monomer	HHblits	X-ray	2.30Å	0.29	0.07	Signal recognition particle 54 kDa protein
1qzw.1.B	17.14	monomer	HHblits	X-ray	4.10Å	0.29	0.07	Signal recognition 54 kDa protein
1qzx.1.A	17.14	monomer	HHblits	X-ray	4.00Å	0.29	0.07	Signal recognition 54 kDa protein
3kl4.1.A	17.14	hetero-oligomer	HHblits	X-ray	3.50Å	0.29	0.07	Signal recognition 54 kDa protein
5l3r.1.B	13.89	hetero-oligomer	HHblits	X-ray	2.50Å	0.27	0.07	Cell division protein FtsY homolog, chloroplastic
3b9q.1.A	13.89	monomer	HHblits	X-ray	1.75Å	0.27	0.07	Chloroplast SRP receptor homolog, alpha subunit CPFTSY
3nva.1.A	20.59	homo-dimer	HHblits	X-ray	2.50Å	0.31	0.07	CTP synthase
3dm9.1.A	13.89	homo-hexamer	HHblits	X-ray	2.20Å	0.27	0.07	Signal recognition particle receptor
3e70.1.A	13.89	monomer	HHblits	X-ray	1.97Å	0.27	0.07	Signal recognition particle receptor
3dmd.1.F	13.89	homo-hexamer	HHblits	X-ray	2.21Å	0.27	0.07	Signal recognition particle receptor
3dmd.1.E	13.89	homo-hexamer	HHblits	X-ray	2.21Å	0.27	0.07	Signal recognition particle receptor
4rz3.1.A	29.41	homo-dimer	HHblits	X-ray	1.90Å	0.31	0.07	Site-determining protein
4rz3.1.B	29.41	homo-dimer	HHblits	X-ray	1.90Å	0.31	0.07	Site-determining protein
2gks.1.A	23.53	homo-dimer	HHblits	X-ray	2.31Å	0.31	0.07	Bifunctional SAT/APS kinase
2gks.1.B	23.53	homo-dimer	HHblits	X-ray	2.31Å	0.31	0.07	Bifunctional SAT/APS kinase
1vma.1.A	20.00	monomer	HHblits	X-ray	1.60Å	0.29	0.07	cell division protein FtsY
4ak9.1.A	17.14	homo-dimer	HHblits	X-ray	1.80Å	0.28	0.07	CPFTSY
1fts.1.A	17.14	monomer	HHblits	X-ray	2.20Å	0.28	0.07	FTSY
1odf.1.A	13.89	monomer	HHblits	X-ray	2.25Å	0.26	0.07	HYPOTHETICAL 33.3 KDA PROTEIN IN ADE3-SER2 INTERGENIC REGION
5u1g.1.A	23.53	hetero-oligomer	HHblits	X-ray	3.64Å	0.30	0.07	ParA
5u1g.2.B	23.53	hetero-oligomer	HHblits	X-ray	3.64Å	0.30	0.07	ParA
1ffh.1.A	17.65	monomer	HHblits	X-ray	2.05Å	0.30	0.07	FFH
3do6.1.A	20.59	homo-tetramer	HHblits	X-ray	1.85Å	0.30	0.07	Formate--tetrahydrofolate ligase
2bek.1.A	20.59	homo-dimer	HHblits	X-ray	1.80Å	0.30	0.07	SEGREGATION PROTEIN
1wcv.1.A	20.59	homo-dimer	HHblits	X-ray	1.60Å	0.30	0.07	SEGREGATION PROTEIN
2bej.1.A	20.59	homo-dimer	HHblits	X-ray	2.10Å	0.30	0.07	SEGREGATION PROTEIN
1hyq.1.A	20.59	monomer	HHblits	X-ray	2.60Å	0.30	0.07	CELL DIVISION INHIBITOR (MIND-1)
5gad.1.9	17.14	hetero-oligomer	HHblits	EM	NA	0.28	0.07	Signal recognition particle receptor FtsY
5nco.1.c	17.14	hetero-oligomer	HHblits	EM	4.80Å	0.28	0.07	Signal recognition particle receptor FtsY
2qy9.1.A	17.14	monomer	HHblits	X-ray	1.90Å	0.28	0.07	Cell division protein ftsY
1rj9.1.B	17.65	hetero-oligomer	HHblits	X-ray	1.90Å	0.30	0.07	Signal recognition particle protein
2c03.1.A	17.65	monomer	HHblits	X-ray	1.24Å	0.30	0.07	SIGNAL RECOGNITION PARTICLE PROTEIN
2c03.2.A	17.65	monomer	HHblits	X-ray	1.24Å	0.30	0.07	SIGNAL RECOGNITION PARTICLE PROTEIN
1jpj.1.A	17.65	monomer	HHblits	X-ray	2.30Å	0.30	0.07	SIGNAL RECOGNITION PARTICLE PROTEIN
1jpn.1.A	17.65	monomer	HHblits	X-ray	1.90Å	0.30	0.07	SIGNAL RECOGNITION PARTICLE PROTEIN
1jpn.2.A	17.65	monomer	HHblits	X-ray	1.90Å	0.30	0.07	SIGNAL RECOGNITION PARTICLE PROTEIN
1ls1.1.A	17.65	monomer	HHblits	X-ray	1.10Å	0.30	0.07	SIGNAL RECOGNITION PARTICLE PROTEIN
2j45.1.A	17.65	monomer	HHblits	X-ray	1.14Å	0.30	0.07	SIGNAL RECOGNITION PARTICLE PROTEIN
2j45.2.A	17.65	monomer	HHblits	X-ray	1.14Å	0.30	0.07	SIGNAL RECOGNITION PARTICLE PROTEIN
2j46.1.A	17.65	monomer	HHblits	X-ray	1.14Å	0.30	0.07	SIGNAL RECOGNITION PARTICLE PROTEIN
2j46.2.A	17.65	monomer	HHblits	X-ray	1.14Å	0.30	0.07	SIGNAL RECOGNITION PARTICLE PROTEIN
1o87.1.A	17.65	monomer	HHblits	X-ray	2.10Å	0.30	0.07	SIGNAL RECOGNITION PARTICLE PROTEIN
1o87.2.A	17.65	monomer	HHblits	X-ray	2.10Å	0.30	0.07	SIGNAL RECOGNITION PARTICLE PROTEIN
2c04.1.A	17.65	monomer	HHblits	X-ray	1.15Å	0.30	0.07	SIGNAL RECOGNITION PARTICLE PROTEIN
2c04.2.A	17.65	monomer	HHblits	X-ray	1.15Å	0.30	0.07	SIGNAL RECOGNITION PARTICLE PROTEIN
2ng1.1.A	17.65	monomer	HHblits	X-ray	2.02Å	0.30	0.07	SIGNAL SEQUENCE RECOGNITION PROTEIN FFH
2ynm.1.A	24.24	hetero-oligomer	HHblits	X-ray	2.10Å	0.32	0.07	LIGHT-INDEPENDENT PROTOCHLOROPHYLLIDE REDUCTASE IRON-SULFUR ATP-BINDING PROTEIN
3la6.1.F	17.65	homo-octamer	HHblits	X-ray	3.20Å	0.30	0.07	Tyrosine-protein kinase wzc
3la6.1.B	17.65	homo-octamer	HHblits	X-ray	3.20Å	0.30	0.07	Tyrosine-protein kinase wzc
3la6.1.C	17.65	homo-octamer	HHblits	X-ray	3.20Å	0.30	0.07	Tyrosine-protein kinase wzc
3la6.1.D	17.65	homo-octamer	HHblits	X-ray	3.20Å	0.30	0.07	Tyrosine-protein kinase wzc
3la6.1.E	17.65	homo-octamer	HHblits	X-ray	3.20Å	0.30	0.07	Tyrosine-protein kinase wzc
3la6.1.A	17.65	homo-octamer	HHblits	X-ray	3.20Å	0.30	0.07	Tyrosine-protein kinase wzc
3la6.1.G	17.65	homo-octamer	HHblits	X-ray	3.20Å	0.30	0.07	Tyrosine-protein kinase wzc
3la6.1.H	17.65	homo-octamer	HHblits	X-ray	3.20Å	0.30	0.07	Tyrosine-protein kinase wzc
3la6.2.C	17.65	homo-octamer	HHblits	X-ray	3.20Å	0.30	0.07	Tyrosine-protein kinase wzc
4v02.1.A	27.27	hetero-oligomer	HHblits	X-ray	2.70Å	0.32	0.07	SITE-DETERMINING PROTEIN
3ea0.1.A	14.29	homo-dimer	HHblits	X-ray	2.20Å	0.27	0.07	ATPase, ParA family
3ea0.1.B	14.29	homo-dimer	HHblits	X-ray	2.20Å	0.27	0.07	ATPase, ParA family
1dah.1.A	23.53	homo-dimer	HHblits	X-ray	1.64Å	0.29	0.07	DETHIOBIOTIN SYNTHETASE
1byi.1.A	23.53	homo-dimer	HHblits	X-ray	0.97Å	0.29	0.07	DETHIOBIOTIN SYNTHASE
1a7j.1.A	17.65	monomer	HHblits	X-ray	2.50Å	0.29	0.07	PHOSPHORIBULOKINASE
1rj9.1.A	24.24	hetero-oligomer	HHblits	X-ray	1.90Å	0.32	0.07	Signal Recognition Protein
4wop.1.A	27.27	homo-dimer	HHblits	X-ray	2.39Å	0.32	0.07	ATP-dependent dethiobiotin synthetase BioD
5aun.1.B	20.59	hetero-oligomer	HHblits	X-ray	1.63Å	0.29	0.07	ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog
3vx3.1.A	20.59	homo-dimer	HHblits	X-ray	2.10Å	0.29	0.07	ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog
5auq.3.A	20.59	homo-dimer	HHblits	X-ray	2.53Å	0.29	0.07	ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog
3vx3.1.B	20.59	homo-dimer	HHblits	X-ray	2.10Å	0.29	0.07	ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog
2f1r.1.A	28.13	homo-dimer	HHblits	X-ray	2.10Å	0.34	0.06	molybdopterin-guanine dinucleotide biosynthesis protein B (mobB)
2f1r.1.B	28.13	homo-dimer	HHblits	X-ray	2.10Å	0.34	0.06	molybdopterin-guanine dinucleotide biosynthesis protein B (mobB)
5l3q.1.B	11.11	hetero-oligomer	HHblits	X-ray	3.20Å	0.24	0.07	Signal recognition particle receptor subunit alpha
1ion.1.A	12.12	monomer	HHblits	X-ray	2.30Å	0.31	0.07	PROBABLE CELL DIVISION INHIBITOR MIND
3ez7.1.A	8.57	homo-dimer	HHblits	X-ray	2.92Å	0.26	0.07	Plasmid partition protein A
1vco.1.A	14.71	homo-tetramer	HHblits	X-ray	2.15Å	0.28	0.07	CTP synthetase
4v03.1.A	24.24	homo-dimer	HHblits	X-ray	1.90Å	0.31	0.07	SITE-DETERMINING PROTEIN
2yhs.1.A	17.65	monomer	HHblits	X-ray	1.60Å	0.28	0.07	CELL DIVISION PROTEIN FTSY
2xxa.1.B	17.65	hetero-oligomer	HHblits	X-ray	3.94Å	0.28	0.07	SRP RECEPTOR FTSY
3adb.1.A	24.24	homo-dimer	HHblits	X-ray	2.80Å	0.31	0.07	L-seryl-tRNA(Sec) kinase
3adc.1.B	24.24	homo-dimer	HHblits	X-ray	2.90Å	0.31	0.07	L-seryl-tRNA(Sec) kinase
3adc.1.A	24.24	homo-dimer	HHblits	X-ray	2.90Å	0.31	0.07	L-seryl-tRNA(Sec) kinase
3adb.1.B	24.24	homo-dimer	HHblits	X-ray	2.80Å	0.31	0.07	L-seryl-tRNA(Sec) kinase
3add.1.B	24.24	homo-dimer	HHblits	X-ray	2.40Å	0.31	0.07	L-seryl-tRNA(Sec) kinase
1f48.1.A	27.27	monomer	HHblits	X-ray	2.30Å	0.31	0.07	ARSENITE-TRANSLOCATING ATPASE
4c7o.1.B	14.29	hetero-oligomer	HHblits	X-ray	2.60Å	0.26	0.07	SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY
4ohv.1.A	11.76	monomer	HHblits	X-ray	2.30Å	0.28	0.07	Protein clpf-1
1dts.1.A	24.24	homo-dimer	HHblits	X-ray	1.65Å	0.30	0.07	DETHIOBIOTIN SYNTHETASE
5cb6.3.B	31.25	homo-dimer	HHblits	X-ray	2.79Å	0.32	0.06	Probable adenylyl-sulfate kinase
5cb6.2.B	31.25	homo-dimer	HHblits	X-ray	2.79Å	0.32	0.06	Probable adenylyl-sulfate kinase
1g3r.1.A	12.12	monomer	HHblits	X-ray	2.70Å	0.29	0.07	CELL DIVISION INHIBITOR
3fwy.1.A	21.21	homo-dimer	HHblits	X-ray	1.63Å	0.29	0.07	Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
3fwy.1.B	21.21	homo-dimer	HHblits	X-ray	1.63Å	0.29	0.07	Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
4e07.1.A	21.21	monomer	HHblits	X-ray	2.90Å	0.29	0.07	Plasmid partitioning protein ParF
4e09.1.A	21.21	homo-dimer	HHblits	X-ray	2.99Å	0.29	0.07	Plasmid partitioning protein ParF
4e03.1.A	21.21	monomer	HHblits	X-ray	2.45Å	0.29	0.07	Plasmid partitioning protein ParF
4e03.2.A	21.21	monomer	HHblits	X-ray	2.45Å	0.29	0.07	Plasmid partitioning protein ParF
4dzz.1.A	21.21	monomer	HHblits	X-ray	1.80Å	0.29	0.07	Plasmid partitioning protein ParF
4dzz.2.A	21.21	monomer	HHblits	X-ray	1.80Å	0.29	0.07	Plasmid partitioning protein ParF
2xj9.1.A	20.59	homo-dimer	HHblits	X-ray	2.80Å	0.27	0.07	MIPZ
2xj9.1.B	20.59	homo-dimer	HHblits	X-ray	2.80Å	0.27	0.07	MIPZ
3kb1.1.A	18.18	homo-dimer	HHblits	X-ray	2.90Å	0.29	0.07	Nucleotide-binding protein
5u1j.1.A	15.15	homo-dimer	HHblits	X-ray	2.95Å	0.29	0.07	Uncharacterized protein
5u1j.1.B	15.15	homo-dimer	HHblits	X-ray	2.95Å	0.29	0.07	Uncharacterized protein
5u1j.2.A	15.15	homo-dimer	HHblits	X-ray	2.95Å	0.29	0.07	Uncharacterized protein
5u1j.2.B	15.15	homo-dimer	HHblits	X-ray	2.95Å	0.29	0.07	Uncharacterized protein
3ez6.1.A	11.76	homo-dimer	HHblits	X-ray	2.58Å	0.27	0.07	Plasmid partition protein A
3ez6.1.B	11.76	homo-dimer	HHblits	X-ray	2.58Å	0.27	0.07	Plasmid partition protein A
3ez2.1.B	11.76	homo-dimer	HHblits	X-ray	2.05Å	0.27	0.07	Plasmid partition protein A
3ug7.1.A	11.76	homo-tetramer	HHblits	X-ray	2.90Å	0.26	0.07	arsenical pump-driving ATPase
3ug6.1.A	11.76	homo-tetramer	HHblits	X-ray	3.30Å	0.26	0.07	arsenical pump-driving ATPase
3k9h.1.A	15.15	homo-dimer	HHblits	X-ray	2.25Å	0.29	0.07	PF-32 protein
3k9g.1.A	15.15	homo-dimer	HHblits	X-ray	2.25Å	0.29	0.07	PF-32 protein
3c8u.1.A	8.82	monomer	HHblits	X-ray	1.95Å	0.26	0.07	Fructokinase
3pg5.1.A	25.00	monomer	HHblits	X-ray	3.30Å	0.31	0.06	Uncharacterized protein
3pg5.2.A	25.00	monomer	HHblits	X-ray	3.30Å	0.31	0.06	Uncharacterized protein
3pg5.3.A	25.00	monomer	HHblits	X-ray	3.30Å	0.31	0.06	Uncharacterized protein
3pg5.4.A	25.00	monomer	HHblits	X-ray	3.30Å	0.31	0.06	Uncharacterized protein
3ez9.1.A	14.71	homo-dimer	HHblits	X-ray	2.80Å	0.26	0.07	ParA
3ez9.2.A	14.71	homo-dimer	HHblits	X-ray	2.80Å	0.26	0.07	ParA
3ezf.1.A	14.71	homo-dimer	HHblits	X-ray	2.80Å	0.26	0.07	ParA
3ibg.1.A	25.81	homo-dimer	HHblits	X-ray	3.20Å	0.33	0.06	ATPase, subunit of the Get complex
4rfv.1.A	25.81	homo-dimer	HHblits	X-ray	1.69Å	0.33	0.06	Bifunctional enzyme CysN/CysC
1yr6.1.A	21.88	homo-dimer	HHblits	X-ray	2.15Å	0.31	0.06	ATP(GTP)binding protein
1yr7.1.A	21.88	homo-dimer	HHblits	X-ray	2.08Å	0.31	0.06	ATP(GTP)binding protein
1yr8.1.A	21.88	homo-dimer	HHblits	X-ray	2.40Å	0.31	0.06	ATP(GTP)binding protein
1yr9.1.A	21.88	homo-dimer	HHblits	X-ray	2.80Å	0.31	0.06	ATP(GTP)binding protein
1yra.1.A	21.88	homo-dimer	HHblits	X-ray	2.30Å	0.31	0.06	ATP(GTP)binding protein
1yra.1.B	21.88	homo-dimer	HHblits	X-ray	2.30Å	0.31	0.06	ATP(GTP)binding protein
1yrb.1.A	21.88	homo-dimer	HHblits	X-ray	1.75Å	0.31	0.06	ATP(GTP)binding protein
2oxr.1.A	21.88	homo-dimer	HHblits	X-ray	2.40Å	0.31	0.06	ATP(GTP)binding protein
1xnj.1.B	21.21	homo-dimer	HHblits	X-ray	1.98Å	0.28	0.07	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthetase 1
1xnj.1.A	21.21	homo-dimer	HHblits	X-ray	1.98Å	0.28	0.07	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthetase 1
4zdi.1.A	14.71	homo-dimer	HHblits	X-ray	3.52Å	0.26	0.07	CTP synthase
2ph1.1.A	18.75	homo-dimer	HHblits	X-ray	2.70Å	0.30	0.06	Nucleotide-binding protein
1rw4.1.A	12.12	homo-dimer	HHblits	X-ray	2.50Å	0.28	0.07	Nitrogenase iron protein 1
1g20.1.E	12.12	hetero-oligomer	HHblits	X-ray	2.20Å	0.28	0.07	NITROGENASE IRON PROTEIN
1g21.1.H	12.12	hetero-oligomer	HHblits	X-ray	3.00Å	0.28	0.07	NITROGENASE IRON PROTEIN
1g21.1.E	12.12	hetero-oligomer	HHblits	X-ray	3.00Å	0.28	0.07	NITROGENASE IRON PROTEIN
4zdk.1.A	14.71	homo-tetramer	HHblits	X-ray	3.49Å	0.25	0.07	CTP synthase
1m8p.1.A	25.81	homo-hexamer	HHblits	X-ray	2.60Å	0.33	0.06	sulfate adenylyltransferase
1i2d.1.A	25.81	homo-hexamer	HHblits	X-ray	2.81Å	0.33	0.06	ATP SULFURYLASE
5a5g.1.A	18.18	homo-dimer	HHblits	X-ray	2.30Å	0.28	0.07	FORMATE--TETRAHYDROFOLATE LIGASE
1mrn.1.A	18.75	homo-dimer	HHblits	X-ray	2.45Å	0.30	0.06	Thymidylate Kinase
1w2h.1.A	18.75	homo-dimer	HHblits	X-ray	2.00Å	0.30	0.06	THYMIDYLATE KINASE TMK
4ijm.1.A	15.15	homo-hexamer	HHblits	X-ray	3.35Å	0.27	0.07	Circadian clock protein kinase KaiC
4ijm.1.C	15.15	homo-hexamer	HHblits	X-ray	3.35Å	0.27	0.07	Circadian clock protein kinase KaiC
4ijm.1.F	15.15	homo-hexamer	HHblits	X-ray	3.35Å	0.27	0.07	Circadian clock protein kinase KaiC
5k5z.1.A	18.75	homo-dimer	HHblits	X-ray	2.37Å	0.30	0.06	ParA
5k5z.2.A	18.75	homo-dimer	HHblits	X-ray	2.37Å	0.30	0.06	ParA
5k5z.2.B	18.75	homo-dimer	HHblits	X-ray	2.37Å	0.30	0.06	ParA
2xj4.1.A	21.21	monomer	HHblits	X-ray	1.60Å	0.27	0.07	MIPZ
2xit.1.A	21.21	homo-dimer	HHblits	X-ray	1.80Å	0.27	0.07	MIPZ
3a4l.1.A	21.88	homo-dimer	HHblits	X-ray	1.80Å	0.29	0.06	L-seryl-tRNA(Sec) kinase
3a4l.1.B	21.88	homo-dimer	HHblits	X-ray	1.80Å	0.29	0.06	L-seryl-tRNA(Sec) kinase
3am1.1.C	21.88	homo-dimer	HHblits	X-ray	2.40Å	0.29	0.06	L-seryl-tRNA(Sec) kinase
5if9.1.A	15.15	monomer	HHblits	X-ray	1.80Å	0.27	0.07	Cobyrinic Acid a,c-diamide synthase
5tsg.1.A	25.00	homo-hexamer	HHblits	X-ray	3.40Å	0.29	0.06	Type IV pilus biogenesis ATPase PilB
5tsg.1.C	25.00	homo-hexamer	HHblits	X-ray	3.40Å	0.29	0.06	Type IV pilus biogenesis ATPase PilB
5tsh.1.C	25.00	homo-hexamer	HHblits	X-ray	2.30Å	0.29	0.06	Type IV pilus biogenesis ATPase PilB
5tsh.1.B	25.00	homo-hexamer	HHblits	X-ray	2.30Å	0.29	0.06	Type IV pilus biogenesis ATPase PilB
5tsh.1.F	25.00	homo-hexamer	HHblits	X-ray	2.30Å	0.29	0.06	Type IV pilus biogenesis ATPase PilB
4c0h.1.A	18.75	hetero-oligomer	HHblits	X-ray	2.70Å	0.29	0.06	MRNA CLEAVAGE AND POLYADENYLATION FACTOR CLP1
4jim.1.A	18.18	homo-dimer	HHblits	X-ray	2.10Å	0.26	0.07	Formate--tetrahydrofolate ligase
4jjz.1.A	18.18	homo-dimer	HHblits	X-ray	2.50Å	0.26	0.07	Formate--tetrahydrofolate ligase
1eg7.1.A	18.18	homo-tetramer	HHblits	X-ray	2.50Å	0.26	0.07	FORMYLTETRAHYDROFOLATE SYNTHETASE
1fp7.1.A	18.18	homo-tetramer	HHblits	X-ray	3.20Å	0.26	0.07	FORMATE--TETRAHYDROFOLATE LIGASE
3qus.1.A	18.18	homo-dimer	HHblits	X-ray	2.84Å	0.26	0.07	Formate--tetrahydrofolate ligase
3r9i.1.B	21.88	hetero-oligomer	HHblits	X-ray	2.60Å	0.29	0.06	Septum site-determining protein minD
3q9l.1.A	21.88	homo-dimer	HHblits	X-ray	2.34Å	0.29	0.06	Septum site-determining protein minD
2woo.1.A	19.35	homo-dimer	HHblits	X-ray	3.01Å	0.31	0.06	ATPASE GET3
5it5.1.A	25.81	homo-hexamer	HHblits	X-ray	2.65Å	0.31	0.06	ATP binding motif-containing protein PilF
5it5.1.B	25.81	homo-hexamer	HHblits	X-ray	2.65Å	0.31	0.06	ATP binding motif-containing protein PilF
5it5.1.C	25.81	homo-hexamer	HHblits	X-ray	2.65Å	0.31	0.06	ATP binding motif-containing protein PilF
5it5.1.D	25.81	homo-hexamer	HHblits	X-ray	2.65Å	0.31	0.06	ATP binding motif-containing protein PilF
5it5.1.E	25.81	homo-hexamer	HHblits	X-ray	2.65Å	0.31	0.06	ATP binding motif-containing protein PilF
5it5.1.F	25.81	homo-hexamer	HHblits	X-ray	2.65Å	0.31	0.06	ATP binding motif-containing protein PilF
3k0e.1.A	15.63	homo-hexamer	HHblits	X-ray	3.20Å	0.28	0.06	Circadian clock protein kinase KaiC
3k0e.1.B	15.63	homo-hexamer	HHblits	X-ray	3.20Å	0.28	0.06	Circadian clock protein kinase KaiC
3k0e.1.C	15.63	homo-hexamer	HHblits	X-ray	3.20Å	0.28	0.06	Circadian clock protein kinase KaiC
3k0e.1.D	15.63	homo-hexamer	HHblits	X-ray	3.20Å	0.28	0.06	Circadian clock protein kinase KaiC
3k0e.1.E	15.63	homo-hexamer	HHblits	X-ray	3.20Å	0.28	0.06	Circadian clock protein kinase KaiC
3k0e.1.F	15.63	homo-hexamer	HHblits	X-ray	3.20Å	0.28	0.06	Circadian clock protein kinase KaiC
4wzb.1.F	12.50	hetero-oligomer	HHblits	X-ray	2.30Å	0.27	0.06	Nitrogenase iron protein 1
4wzb.1.E	12.50	hetero-oligomer	HHblits	X-ray	2.30Å	0.27	0.06	Nitrogenase iron protein 1
2xx3.1.A	12.12	homo-dimer	HHblits	X-ray	2.00Å	0.25	0.07	THYMIDYLATE KINASE
1e9f.1.A	12.12	homo-dimer	HHblits	X-ray	1.90Å	0.25	0.07	THYMIDYLATE KINASE
3mle.1.A	19.35	homo-dimer	HHblits	X-ray	2.80Å	0.30	0.06	Dethiobiotin synthetase
2yvu.1.A	31.03	homo-dimer	HHblits	X-ray	2.10Å	0.34	0.06	Probable adenylyl-sulfate kinase
2yvu.1.B	31.03	homo-dimer	HHblits	X-ray	2.10Å	0.34	0.06	Probable adenylyl-sulfate kinase
3jc8.36.A	25.81	monomer	HHblits	EM	NA	0.29	0.06	Type IV-A pilus assembly ATPase PilB
3jc8.37.A	25.81	monomer	HHblits	EM	NA	0.29	0.06	Type IV-A pilus assembly ATPase PilB
1xd9.1.A	12.50	homo-dimer	HHblits	X-ray	2.80Å	0.26	0.06	Nitrogenase iron protein 1
2ax4.1.A	22.58	homo-dimer	HHblits	X-ray	2.50Å	0.29	0.06	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthetase 2
4bzq.1.A	23.33	homo-dimer	HHblits	X-ray	2.10Å	0.31	0.06	BIFUNCTIONAL ENZYME CYSN/CYSC
1e98.1.A	12.50	homo-dimer	HHblits	X-ray	1.90Å	0.26	0.06	THYMIDYLATE KINASE
1nmy.1.A	12.50	monomer	HHblits	X-ray	1.60Å	0.26	0.06	similar to THYMIDYLATE KINASE (DTMP KINASE)
1e2e.1.A	12.50	homo-dimer	HHblits	X-ray	2.00Å	0.26	0.06	THYMIDYLATE KINASE
2w58.1.A	22.58	homo-dimer	HHblits	X-ray	2.50Å	0.28	0.06	PRIMOSOME COMPONENT (HELICASE LOADER)
2w58.1.B	22.58	homo-dimer	HHblits	X-ray	2.50Å	0.28	0.06	PRIMOSOME COMPONENT (HELICASE LOADER)
2yof.1.A	9.38	monomer	HHblits	X-ray	1.82Å	0.25	0.06	THYMIDYLATE KINASE
2yof.3.A	9.38	monomer	HHblits	X-ray	1.82Å	0.25	0.06	THYMIDYLATE KINASE
2yog.1.A	9.38	monomer	HHblits	X-ray	1.50Å	0.25	0.06	THYMIDYLATE KINASE
2yog.2.A	9.38	monomer	HHblits	X-ray	1.50Å	0.25	0.06	THYMIDYLATE KINASE
1f48.1.A	15.63	monomer	HHblits	X-ray	2.30Å	0.25	0.06	ARSENITE-TRANSLOCATING ATPASE
2qmo.1.A	20.00	homo-dimer	HHblits	X-ray	1.47Å	0.30	0.06	Dethiobiotin synthetase
3iqx.1.A	24.14	homo-dimer	HHblits	X-ray	3.50Å	0.32	0.06	Tail-anchored protein targeting factor Get3
4unq.1.A	16.67	monomer	HHblits	X-ray	2.30Å	0.30	0.06	THYMIDYLATE KINASE
4unq.2.A	16.67	monomer	HHblits	X-ray	2.30Å	0.30	0.06	THYMIDYLATE KINASE
4unp.1.A	16.67	monomer	HHblits	X-ray	2.30Å	0.30	0.06	THYMIDYLATE KINASE
4unn.1.A	16.67	monomer	HHblits	X-ray	2.50Å	0.30	0.06	THYMIDYLATE KINASE
5lnk.1.Y	16.13	hetero-oligomer	HHblits	EM	3.90Å	0.27	0.06	Mitochondrial complex I, 42 kDa subunit
2ofx.1.A	20.00	homo-dimer	HHblits	X-ray	1.90Å	0.29	0.06	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthetase 1
1de0.1.A	16.67	homo-dimer	HHblits	X-ray	2.40Å	0.29	0.06	NITROGENASE IRON PROTEIN
1xcp.1.A	16.67	homo-dimer	HHblits	X-ray	3.20Å	0.29	0.06	Nitrogenase iron protein 1
1xcp.2.A	16.67	homo-dimer	HHblits	X-ray	3.20Å	0.29	0.06	Nitrogenase iron protein 1
1m34.1.E	16.67	hetero-oligomer	HHblits	X-ray	2.30Å	0.29	0.06	Nitrogenase Iron Protein 1
1m1y.1.E	16.67	hetero-oligomer	HHblits	X-ray	3.20Å	0.29	0.06	nitrogenase IRON protein 1
1m1y.1.F	16.67	hetero-oligomer	HHblits	X-ray	3.20Å	0.29	0.06	nitrogenase IRON protein 1
2afi.1.E	16.67	hetero-oligomer	HHblits	X-ray	3.10Å	0.29	0.06	Nitrogenase iron protein 1
2afh.1.E	16.67	hetero-oligomer	HHblits	X-ray	2.10Å	0.29	0.06	Nitrogenase iron protein 1
2afh.1.F	16.67	hetero-oligomer	HHblits	X-ray	2.10Å	0.29	0.06	Nitrogenase iron protein 1
1g5p.1.A	16.67	homo-dimer	HHblits	X-ray	2.20Å	0.29	0.06	NITROGENASE IRON PROTEIN
1g5p.1.B	16.67	homo-dimer	HHblits	X-ray	2.20Å	0.29	0.06	NITROGENASE IRON PROTEIN
1g1m.1.A	16.67	homo-dimer	HHblits	X-ray	2.25Å	0.29	0.06	NITROGENASE IRON PROTEIN
1g1m.1.B	16.67	homo-dimer	HHblits	X-ray	2.25Å	0.29	0.06	NITROGENASE IRON PROTEIN
1fp6.1.A	16.67	homo-dimer	HHblits	X-ray	2.15Å	0.29	0.06	NITROGENASE IRON PROTEIN
1nip.1.A	16.67	homo-dimer	HHblits	X-ray	2.90Å	0.29	0.06	NITROGENASE IRON PROTEIN
1nip.1.B	16.67	homo-dimer	HHblits	X-ray	2.90Å	0.29	0.06	NITROGENASE IRON PROTEIN
5bq5.1.A	20.00	monomer	HHblits	X-ray	2.10Å	0.28	0.06	Insertion sequence IS5376 putative ATP-binding protein
4d4j.1.A	16.67	homo-dimer	HHblits	X-ray	3.00Å	0.28	0.06	6-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE 3
5eaw.1.A	24.14	monomer	HHblits	X-ray	3.00Å	0.31	0.06	DNA replication ATP-dependent helicase/nuclease DNA2
1e9c.1.A	9.68	homo-dimer	HHblits	X-ray	1.60Å	0.25	0.06	THYMIDYLATE KINASE
3uxm.1.A	12.90	monomer	HHblits	X-ray	1.95Å	0.25	0.06	Thymidylate kinase
3uxm.2.A	12.90	monomer	HHblits	X-ray	1.95Å	0.25	0.06	Thymidylate kinase
1qhh.1.A	25.00	hetero-oligomer	HHblits	X-ray	2.50Å	0.33	0.06	PROTEIN (PCRA (SUBUNIT))
1nks.1.C	24.14	homo-trimer	HHblits	X-ray	2.57Å	0.30	0.06	ADENYLATE KINASE
1nks.1.B	24.14	homo-trimer	HHblits	X-ray	2.57Å	0.30	0.06	ADENYLATE KINASE
1nks.1.A	24.14	homo-trimer	HHblits	X-ray	2.57Å	0.30	0.06	ADENYLATE KINASE
1xdb.1.A	17.24	homo-dimer	HHblits	X-ray	2.80Å	0.29	0.06	Nitrogenase iron protein 1
5xb5.1.A	17.24	homo-dimer	HHblits	X-ray	2.23Å	0.29	0.06	Thymidylate kinase
5xbh.1.A	17.24	homo-dimer	HHblits	X-ray	2.23Å	0.29	0.06	Thymidylate kinase
2pbr.1.B	17.24	homo-dimer	HHblits	X-ray	1.96Å	0.29	0.06	Thymidylate kinase
2pbr.1.A	17.24	homo-dimer	HHblits	X-ray	1.96Å	0.29	0.06	Thymidylate kinase
4s35.1.B	17.24	homo-dimer	HHblits	X-ray	1.55Å	0.29	0.06	Thymidylate kinase
5xb2.1.B	17.24	homo-dimer	HHblits	X-ray	2.16Å	0.29	0.06	Thymidylate kinase
2ofw.1.B	20.69	homo-dimer	HHblits	X-ray	2.05Å	0.29	0.06	APS kinase domain of the PAPS synthetase 1
2ofw.1.A	20.69	homo-dimer	HHblits	X-ray	2.05Å	0.29	0.06	APS kinase domain of the PAPS synthetase 1
2pey.1.A	20.69	homo-dimer	HHblits	X-ray	1.88Å	0.29	0.06	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthetase 1 (PAPS synthetase 1) (PAPSS 1) (Sulfurylase kinase 1) (SK1) (SK 1)
2pey.1.B	20.69	homo-dimer	HHblits	X-ray	1.88Å	0.29	0.06	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthetase 1 (PAPS synthetase 1) (PAPSS 1) (Sulfurylase kinase 1) (SK1) (SK 1)
3hjn.1.A	17.24	homo-dimer	HHblits	X-ray	2.10Å	0.29	0.06	Thymidylate kinase
3hjn.1.B	17.24	homo-dimer	HHblits	X-ray	2.10Å	0.29	0.06	Thymidylate kinase
2wwg.2.B	6.45	homo-dimer	HHblits	X-ray	2.40Å	0.23	0.06	THYMIDILATE KINASE, PUTATIVE
2wwg.2.A	6.45	homo-dimer	HHblits	X-ray	2.40Å	0.23	0.06	THYMIDILATE KINASE, PUTATIVE
3n2i.1.A	10.00	homo-dimer	HHblits	X-ray	2.25Å	0.26	0.06	Thymidylate kinase
4gmd.1.B	13.33	homo-dimer	HHblits	X-ray	1.98Å	0.25	0.06	Thymidylate kinase
4gmd.1.A	13.33	homo-dimer	HHblits	X-ray	1.98Å	0.25	0.06	Thymidylate kinase
4edh.1.A	13.33	homo-dimer	HHblits	X-ray	1.32Å	0.25	0.06	Thymidylate kinase
4e5u.1.A	13.33	homo-dimer	HHblits	X-ray	1.81Å	0.25	0.06	Thymidylate kinase
4e5u.1.B	13.33	homo-dimer	HHblits	X-ray	1.81Å	0.25	0.06	Thymidylate kinase
3uwo.1.A	13.33	monomer	HHblits	X-ray	1.70Å	0.25	0.06	Thymidylate kinase
3uwk.1.A	13.33	monomer	HHblits	X-ray	1.91Å	0.25	0.06	Thymidylate kinase
3v9p.1.A	13.33	monomer	HHblits	X-ray	1.90Å	0.25	0.06	Thymidylate kinase
5he9.1.A	20.69	hetero-oligomer	HHblits	X-ray	1.90Å	0.28	0.06	Helicase loader
5he8.2.B	20.69	homo-dimer	HHblits	X-ray	2.60Å	0.28	0.06	Helicase loader
5he8.2.A	20.69	homo-dimer	HHblits	X-ray	2.60Å	0.28	0.06	Helicase loader
5he8.6.B	20.69	homo-dimer	HHblits	X-ray	2.60Å	0.28	0.06	Helicase loader
5he8.3.B	20.69	homo-dimer	HHblits	X-ray	2.60Å	0.28	0.06	Helicase loader
5he8.3.A	20.69	homo-dimer	HHblits	X-ray	2.60Å	0.28	0.06	Helicase loader
5he8.6.A	20.69	homo-dimer	HHblits	X-ray	2.60Å	0.28	0.06	Helicase loader
5he8.5.A	20.69	homo-dimer	HHblits	X-ray	2.60Å	0.28	0.06	Helicase loader
5he8.5.B	20.69	homo-dimer	HHblits	X-ray	2.60Å	0.28	0.06	Helicase loader
5he8.1.A	20.69	homo-dimer	HHblits	X-ray	2.60Å	0.28	0.06	Helicase loader
5he8.4.A	20.69	homo-dimer	HHblits	X-ray	2.60Å	0.28	0.06	Helicase loader
5he8.4.B	20.69	homo-dimer	HHblits	X-ray	2.60Å	0.28	0.06	Helicase loader
5he8.1.B	20.69	homo-dimer	HHblits	X-ray	2.60Å	0.28	0.06	Helicase loader
3ec2.1.A	20.69	monomer	HHblits	X-ray	2.70Å	0.27	0.06	DNA replication protein DnaC
1ki9.1.A	24.14	homo-trimer	HHblits	X-ray	2.76Å	0.27	0.06	adenylate kinase
1ki9.1.B	24.14	homo-trimer	HHblits	X-ray	2.76Å	0.27	0.06	adenylate kinase
1ki9.1.C	24.14	homo-trimer	HHblits	X-ray	2.76Å	0.27	0.06	adenylate kinase
3igf.1.A	17.24	homo-dimer	HHblits	X-ray	2.00Å	0.27	0.06	All4481 protein
3igf.1.B	17.24	homo-dimer	HHblits	X-ray	2.00Å	0.27	0.06	All4481 protein
4bzp.1.A	25.93	homo-dimer	HHblits	X-ray	1.47Å	0.32	0.05	BIFUNCTIONAL ENZYME CYSN/CYSC
2plr.1.A	25.93	homo-dimer	HHblits	X-ray	1.60Å	0.32	0.05	Probable thymidylate kinase
2plr.1.B	25.93	homo-dimer	HHblits	X-ray	1.60Å	0.32	0.05	Probable thymidylate kinase
4rzu.1.A	25.93	homo-dimer	HHblits	X-ray	2.80Å	0.32	0.05	Probable thymidylate kinase
4rzu.1.B	25.93	homo-dimer	HHblits	X-ray	2.80Å	0.32	0.05	Probable thymidylate kinase
4rzx.1.B	25.93	homo-dimer	HHblits	X-ray	2.30Å	0.32	0.05	Probable thymidylate kinase
3kjg.2.A	22.22	homo-dimer	HHblits	X-ray	2.30Å	0.31	0.05	CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
3kjg.1.A	22.22	monomer	HHblits	X-ray	2.30Å	0.31	0.05	CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
3kji.1.A	22.22	homo-dimer	HHblits	X-ray	2.13Å	0.31	0.05	CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
3kji.2.A	22.22	homo-dimer	HHblits	X-ray	2.13Å	0.31	0.05	CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
3kjh.1.A	22.22	homo-dimer	HHblits	X-ray	1.90Å	0.31	0.05	CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
3kje.1.A	22.22	monomer	HHblits	X-ray	2.30Å	0.31	0.05	CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
3tqc.1.A	14.81	homo-dimer	HHblits	X-ray	2.30Å	0.31	0.05	Pantothenate kinase
3avo.1.A	18.52	homo-dimer	HHblits	X-ray	2.55Å	0.31	0.05	Pantothenate kinase
3pxi.1.B	29.63	hetero-oligomer	HHblits	X-ray	6.93Å	0.31	0.05	Negative regulator of genetic competence ClpC/MecB
3pxi.1.D	29.63	hetero-oligomer	HHblits	X-ray	6.93Å	0.31	0.05	Negative regulator of genetic competence ClpC/MecB
3pxi.1.F	29.63	hetero-oligomer	HHblits	X-ray	6.93Å	0.31	0.05	Negative regulator of genetic competence ClpC/MecB
4wza.1.E	14.29	hetero-oligomer	HHblits	X-ray	1.90Å	0.28	0.06	Nitrogenase iron protein 1
4wza.1.F	14.29	hetero-oligomer	HHblits	X-ray	1.90Å	0.28	0.06	Nitrogenase iron protein 1
2c8v.1.A	14.29	monomer	HHblits	X-ray	2.50Å	0.28	0.06	NITROGENASE IRON PROTEIN 1
2pcm.1.A	18.52	homo-dimer	HHblits	X-ray	2.40Å	0.30	0.05	DIPHTHINE SYNTHASE
2pcm.1.B	18.52	homo-dimer	HHblits	X-ray	2.40Å	0.30	0.05	DIPHTHINE SYNTHASE
2ed3.1.A	18.52	homo-dimer	HHblits	X-ray	2.50Å	0.30	0.05	diphthine synthase
2ed3.1.B	18.52	homo-dimer	HHblits	X-ray	2.50Å	0.30	0.05	diphthine synthase
2z6r.1.A	18.52	homo-dimer	HHblits	X-ray	1.50Å	0.30	0.05	diphthine synthase
2z6r.1.B	18.52	homo-dimer	HHblits	X-ray	1.50Å	0.30	0.05	diphthine synthase
2ek4.1.A	18.52	homo-dimer	HHblits	X-ray	2.20Å	0.30	0.05	diphthine synthase
2ek4.1.B	18.52	homo-dimer	HHblits	X-ray	2.20Å	0.30	0.05	diphthine synthase
2dsg.1.A	18.52	homo-dimer	HHblits	X-ray	2.00Å	0.30	0.05	diphthine synthase
2dsg.1.B	18.52	homo-dimer	HHblits	X-ray	2.00Å	0.30	0.05	diphthine synthase
2ek7.1.A	18.52	homo-dimer	HHblits	X-ray	2.00Å	0.30	0.05	Probable diphthine synthase
2ek7.1.B	18.52	homo-dimer	HHblits	X-ray	2.00Å	0.30	0.05	Probable diphthine synthase
1esm.1.A	14.81	homo-dimer	HHblits	X-ray	2.50Å	0.30	0.05	PANTOTHENATE KINASE
1esm.1.B	14.81	homo-dimer	HHblits	X-ray	2.50Å	0.30	0.05	PANTOTHENATE KINASE
1esn.1.A	14.81	homo-dimer	HHblits	X-ray	2.60Å	0.30	0.05	PANTOTHENATE KINASE
1esn.1.B	14.81	homo-dimer	HHblits	X-ray	2.60Å	0.30	0.05	PANTOTHENATE KINASE
1esn.2.B	14.81	homo-dimer	HHblits	X-ray	2.60Å	0.30	0.05	PANTOTHENATE KINASE
1cp2.1.A	14.29	homo-dimer	HHblits	X-ray	1.93Å	0.27	0.06	NITROGENASE IRON PROTEIN
1cp2.1.B	14.29	homo-dimer	HHblits	X-ray	1.93Å	0.27	0.06	NITROGENASE IRON PROTEIN
1kht.1.A	25.93	homo-trimer	HHblits	X-ray	2.50Å	0.29	0.05	adenylate kinase
1kht.1.B	25.93	homo-trimer	HHblits	X-ray	2.50Å	0.29	0.05	adenylate kinase
1kht.1.C	25.93	homo-trimer	HHblits	X-ray	2.50Å	0.29	0.05	adenylate kinase
1y63.1.A	41.67	monomer	HHblits	X-ray	1.70Å	0.38	0.05	Lmaj004144AAA protein
2qby.1.C	19.23	hetero-oligomer	HHblits	X-ray	3.35Å	0.30	0.05	Cell division control protein 6 homolog 1
4ba6.1.A	11.54	monomer	HHblits	X-ray	1.42Å	0.29	0.05	ENDOGLUCANASE CEL5A
5afe.1.A	11.54	monomer	HHblits	X-ray	2.60Å	0.29	0.05	ENDOGLUCANASE CEL5A
2emr.1.A	15.38	homo-dimer	HHblits	X-ray	2.40Å	0.29	0.05	Probable diphthine synthase
2emr.1.B	15.38	homo-dimer	HHblits	X-ray	2.40Å	0.29	0.05	Probable diphthine synthase
2ypj.1.A	11.54	monomer	HHblits	X-ray	2.35Å	0.29	0.05	ENDOGLUCANASE CEL5A
2v1u.1.A	19.23	monomer	HHblits	X-ray	3.10Å	0.29	0.05	CELL DIVISION CONTROL PROTEIN 6 HOMOLOG
2pb4.1.A	15.38	homo-dimer	HHblits	X-ray	2.10Å	0.29	0.05	diphthine synthase
2pb4.1.B	15.38	homo-dimer	HHblits	X-ray	2.10Å	0.29	0.05	diphthine synthase
2el0.1.A	15.38	homo-dimer	HHblits	X-ray	2.40Å	0.29	0.05	diphthine synthase
2el0.1.B	15.38	homo-dimer	HHblits	X-ray	2.40Å	0.29	0.05	diphthine synthase
2eh2.1.B	15.38	homo-dimer	HHblits	X-ray	2.00Å	0.29	0.05	diphthine synthase
2eh2.1.A	15.38	homo-dimer	HHblits	X-ray	2.00Å	0.29	0.05	diphthine synthase
2ed5.1.A	15.38	homo-dimer	HHblits	X-ray	2.10Å	0.29	0.05	diphthine synthase
2ed5.1.B	15.38	homo-dimer	HHblits	X-ray	2.10Å	0.29	0.05	diphthine synthase
2en5.1.A	15.38	homo-dimer	HHblits	X-ray	1.90Å	0.29	0.05	diphthine synthase
2en5.1.B	15.38	homo-dimer	HHblits	X-ray	1.90Å	0.29	0.05	diphthine synthase
2dxw.1.A	15.38	homo-dimer	HHblits	X-ray	1.80Å	0.29	0.05	diphthine synthase
2dxw.1.B	15.38	homo-dimer	HHblits	X-ray	1.80Å	0.29	0.05	diphthine synthase
3h86.2.A	23.08	homo-trimer	HHblits	X-ray	2.50Å	0.28	0.05	Adenylate kinase
3h86.1.B	23.08	homo-trimer	HHblits	X-ray	2.50Å	0.28	0.05	Adenylate kinase
3h86.1.C	23.08	homo-trimer	HHblits	X-ray	2.50Å	0.28	0.05	Adenylate kinase
3h86.1.A	23.08	homo-trimer	HHblits	X-ray	2.50Å	0.28	0.05	Adenylate kinase
4ypn.1.A	24.00	monomer	HHblits	X-ray	2.07Å	0.31	0.05	Lon protease
1q3t.1.A	20.83	monomer	HHblits	NMR	NA	0.33	0.05	Cytidylate kinase
2eld.1.A	16.00	homo-dimer	HHblits	X-ray	2.30Å	0.30	0.05	diphthine synthase
2eld.1.B	16.00	homo-dimer	HHblits	X-ray	2.30Å	0.30	0.05	diphthine synthase
2pch.1.A	16.00	homo-dimer	HHblits	X-ray	2.00Å	0.30	0.05	Probable diphthine synthase
2pch.1.B	16.00	homo-dimer	HHblits	X-ray	2.00Å	0.30	0.05	Probable diphthine synthase
5uj7.1.A	16.00	hetero-oligomer	HHblits	X-ray	3.39Å	0.30	0.05	Origin recognition complex subunit 1
5uj7.2.A	16.00	hetero-oligomer	HHblits	X-ray	3.39Å	0.30	0.05	Origin recognition complex subunit 1
3hr7.1.A	25.00	homo-dimer	HHblits	X-ray	1.80Å	0.33	0.05	Shikimate kinase
3hr7.1.B	25.00	homo-dimer	HHblits	X-ray	1.80Å	0.33	0.05	Shikimate kinase
1zui.1.A	25.00	monomer	HHblits	X-ray	2.30Å	0.33	0.05	Shikimate kinase
1zuh.1.A	25.00	monomer	HHblits	X-ray	1.80Å	0.33	0.05	Shikimate kinase
3muf.1.A	25.00	monomer	HHblits	X-ray	2.30Å	0.33	0.05	Shikimate kinase
4cvn.1.A	34.78	hetero-oligomer	HHblits	X-ray	2.12Å	0.36	0.05	PUTATIVE ADENYLATE KINASE
3mrs.1.A	25.00	monomer	HHblits	X-ray	2.40Å	0.32	0.05	Shikimate kinase
4y0a.1.A	20.83	monomer	HHblits	X-ray	1.91Å	0.31	0.05	Shikimate kinase
4ttq.1.A	27.27	monomer	HHblits	X-ray	2.20Å	0.37	0.04	Dephospho-CoA kinase
4ttp.1.A	27.27	monomer	HHblits	X-ray	2.20Å	0.37	0.04	Dephospho-CoA kinase
4hse.1.A	24.00	monomer	HHblits	X-ray	2.20Å	0.27	0.05	Chaperone protein ClpB
5jzv.1.A	30.43	monomer	HHblits	X-ray	2.07Å	0.33	0.05	Adenylate kinase isoenzyme 6
1uf9.1.A	28.57	monomer	HHblits	X-ray	2.80Å	0.40	0.04	TT1252 protein
1uf9.2.A	28.57	monomer	HHblits	X-ray	2.80Å	0.40	0.04	TT1252 protein
1uf9.3.A	28.57	monomer	HHblits	X-ray	2.80Å	0.40	0.04	TT1252 protein
1p9r.1.A	20.00	monomer	HHblits	X-ray	2.50Å	0.26	0.05	General secretion pathway protein E
3n2e.1.A	26.09	monomer	HHblits	X-ray	2.53Å	0.32	0.05	Shikimate kinase
2v54.1.A	20.83	homo-dimer	HHblits	X-ray	2.40Å	0.27	0.05	THYMIDYLATE KINASE
4ksr.1.A	20.83	homo-hexamer	HHblits	X-ray	4.20Å	0.27	0.05	Type II secretion system protein E, Hemolysin-coregulated protein
4ksr.1.B	20.83	homo-hexamer	HHblits	X-ray	4.20Å	0.27	0.05	Type II secretion system protein E, Hemolysin-coregulated protein
4ksr.1.C	20.83	homo-hexamer	HHblits	X-ray	4.20Å	0.27	0.05	Type II secretion system protein E, Hemolysin-coregulated protein
4kss.1.A	20.83	homo-hexamer	HHblits	X-ray	7.58Å	0.27	0.05	Type II secretion system protein E, hemolysin-coregulated protein
4kss.1.B	20.83	homo-hexamer	HHblits	X-ray	7.58Å	0.27	0.05	Type II secretion system protein E, hemolysin-coregulated protein
4kss.1.C	20.83	homo-hexamer	HHblits	X-ray	7.58Å	0.27	0.05	Type II secretion system protein E, hemolysin-coregulated protein
4kss.1.D	20.83	homo-hexamer	HHblits	X-ray	7.58Å	0.27	0.05	Type II secretion system protein E, hemolysin-coregulated protein
4kss.1.E	20.83	homo-hexamer	HHblits	X-ray	7.58Å	0.27	0.05	Type II secretion system protein E, hemolysin-coregulated protein
4kss.1.F	20.83	homo-hexamer	HHblits	X-ray	7.58Å	0.27	0.05	Type II secretion system protein E, hemolysin-coregulated protein
3trf.1.A	22.73	homo-dimer	HHblits	X-ray	2.60Å	0.34	0.04	Shikimate kinase
2cdn.1.A	16.67	monomer	HHblits	X-ray	1.90Å	0.26	0.05	ADENYLATE KINASE
3iim.1.A	27.27	monomer	HHblits	X-ray	2.00Å	0.32	0.04	Coilin-interacting nuclear ATPase protein
1we2.1.A	17.39	monomer	HHblits	X-ray	2.30Å	0.29	0.05	Shikimate kinase
1zyu.1.A	17.39	monomer	HHblits	X-ray	2.90Å	0.29	0.05	Shikimate kinase
3baf.1.A	17.39	monomer	HHblits	X-ray	2.25Å	0.29	0.05	Shikimate kinase
2g1j.1.A	17.39	monomer	HHblits	X-ray	2.00Å	0.29	0.05	Shikimate kinase
2g1j.2.A	17.39	monomer	HHblits	X-ray	2.00Å	0.29	0.05	Shikimate kinase
2dfn.1.A	17.39	monomer	HHblits	X-ray	1.93Å	0.29	0.05	Shikimate kinase
2dft.1.A	17.39	homo-tetramer	HHblits	X-ray	2.80Å	0.29	0.05	Shikimate kinase
2dft.1.B	17.39	homo-tetramer	HHblits	X-ray	2.80Å	0.29	0.05	Shikimate kinase
2dft.1.C	17.39	homo-tetramer	HHblits	X-ray	2.80Å	0.29	0.05	Shikimate kinase
4bqs.2.A	17.39	monomer	HHblits	X-ray	2.15Å	0.29	0.05	SHIKIMATE KINASE
4bqs.3.A	17.39	monomer	HHblits	X-ray	2.15Å	0.29	0.05	SHIKIMATE KINASE
3t61.1.A	27.27	homo-dimer	HHblits	X-ray	2.20Å	0.32	0.04	Gluconokinase
3vaa.1.A	27.27	monomer	HHblits	X-ray	1.70Å	0.32	0.04	Shikimate kinase
3vaa.2.A	27.27	monomer	HHblits	X-ray	1.70Å	0.32	0.04	Shikimate kinase
3vaa.3.A	27.27	monomer	HHblits	X-ray	1.70Å	0.32	0.04	Shikimate kinase
1e6c.1.A	13.04	monomer	HHblits	X-ray	1.80Å	0.27	0.05	SHIKIMATE KINASE
1pjq.1.A	13.64	homo-dimer	HHblits	X-ray	2.21Å	0.30	0.04	Siroheme synthase
1pjq.1.B	13.64	homo-dimer	HHblits	X-ray	2.21Å	0.30	0.04	Siroheme synthase
1pjt.1.A	13.64	homo-dimer	HHblits	X-ray	2.80Å	0.29	0.04	Siroheme synthase
1pjt.1.B	13.64	homo-dimer	HHblits	X-ray	2.80Å	0.29	0.04	Siroheme synthase
4pzl.1.A	22.73	homo-dimer	HHblits	X-ray	2.10Å	0.29	0.04	Adenylate kinase
4pzl.1.B	22.73	homo-dimer	HHblits	X-ray	2.10Å	0.29	0.04	Adenylate kinase
2iys.1.A	18.18	monomer	HHblits	X-ray	1.40Å	0.29	0.04	SHIKIMATE KINASE
2iyv.1.A	18.18	monomer	HHblits	X-ray	1.35Å	0.29	0.04	SHIKIMATE KINASE
2iyx.1.A	18.18	monomer	HHblits	X-ray	1.49Å	0.29	0.04	SHIKIMATE KINASE
2iyq.1.A	18.18	monomer	HHblits	X-ray	1.80Å	0.29	0.04	SHIKIMATE KINASE
2iyr.1.A	18.18	monomer	HHblits	X-ray	1.98Å	0.29	0.04	SHIKIMATE KINASE
2iyr.2.A	18.18	monomer	HHblits	X-ray	1.98Å	0.29	0.04	SHIKIMATE KINASE
1ixr.1.C	27.27	hetero-oligomer	HHblits	X-ray	3.30Å	0.29	0.04	RuvB
1kag.1.A	18.18	monomer	HHblits	X-ray	2.05Å	0.29	0.04	Shikimate kinase I
1kag.2.A	18.18	monomer	HHblits	X-ray	2.05Å	0.29	0.04	Shikimate kinase I
4e22.1.A	18.18	monomer	HHblits	X-ray	2.32Å	0.28	0.04	Cytidylate kinase
2pt5.2.A	14.29	monomer	HHblits	X-ray	2.10Å	0.31	0.04	Shikimate kinase
2pt5.1.A	14.29	monomer	HHblits	X-ray	2.10Å	0.31	0.04	Shikimate kinase
2pt5.3.A	14.29	monomer	HHblits	X-ray	2.10Å	0.31	0.04	Shikimate kinase
2pt5.4.A	14.29	monomer	HHblits	X-ray	2.10Å	0.31	0.04	Shikimate kinase
3hdt.1.A	4.35	homo-dimer	HHblits	X-ray	2.79Å	0.24	0.05	putative kinase
3hdt.1.B	4.35	homo-dimer	HHblits	X-ray	2.79Å	0.24	0.05	putative kinase
5vhj.1.E	23.81	hetero-oligomer	HHblits	EM	NA	0.29	0.04	26S proteasome regulatory subunit 10B
5vhm.1.E	23.81	hetero-oligomer	HHblits	EM	NA	0.29	0.04	26S proteasome regulatory subunit 10B
5vho.1.E	23.81	hetero-oligomer	HHblits	EM	NA	0.29	0.04	26S proteasome regulatory subunit 10B
5vhp.1.E	23.81	hetero-oligomer	HHblits	EM	NA	0.29	0.04	26S proteasome regulatory subunit 10B
5vhq.1.E	23.81	hetero-oligomer	HHblits	EM	NA	0.29	0.04	26S proteasome regulatory subunit 10B
5vhr.1.E	23.81	hetero-oligomer	HHblits	EM	NA	0.29	0.04	26S proteasome regulatory subunit 10B
4c8a.1.A	12.50	homo-dimer	HHblits	X-ray	2.70Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4c86.1.B	12.50	homo-dimer	HHblits	X-ray	2.00Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4c86.1.A	12.50	homo-dimer	HHblits	X-ray	2.00Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4c8a.2.A	12.50	homo-dimer	HHblits	X-ray	2.70Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4c8a.2.B	12.50	homo-dimer	HHblits	X-ray	2.70Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4c8c.1.A	12.50	homo-dimer	HHblits	X-ray	2.40Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4c8f.1.A	12.50	homo-dimer	HHblits	X-ray	2.69Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4c8f.1.B	12.50	homo-dimer	HHblits	X-ray	2.69Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4c8f.2.A	12.50	homo-dimer	HHblits	X-ray	2.69Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4c8f.2.B	12.50	homo-dimer	HHblits	X-ray	2.69Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4c9a.1.C	12.50	hetero-oligomer	HHblits	X-ray	2.40Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4c9e.1.A	12.50	hetero-oligomer	HHblits	X-ray	3.00Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4ufs.1.C	12.50	hetero-oligomer	HHblits	X-ray	4.80Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4c8p.1.A	12.50	homo-dimer	HHblits	X-ray	2.10Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4c84.1.A	12.50	monomer	HHblits	X-ray	1.60Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4c84.2.A	12.50	monomer	HHblits	X-ray	1.60Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4c85.1.A	12.50	homo-dimer	HHblits	X-ray	2.50Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4c85.1.B	12.50	homo-dimer	HHblits	X-ray	2.50Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4cdk.1.A	12.50	hetero-oligomer	HHblits	X-ray	2.80Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4cdk.2.A	12.50	hetero-oligomer	HHblits	X-ray	2.80Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4cdk.3.A	12.50	hetero-oligomer	HHblits	X-ray	2.80Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4cdk.4.A	12.50	hetero-oligomer	HHblits	X-ray	2.80Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4cdj.2.A	12.50	monomer	HHblits	X-ray	1.50Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
4cdj.1.A	12.50	monomer	HHblits	X-ray	1.50Å	0.30	0.03	E3 UBIQUITIN-PROTEIN LIGASE ZNRF3