SWISS-MODEL Homology Modelling Report

Model Building Report

This document lists the results for the homology modelling project "A0A009FX77" submitted to SWISS-MODEL workspace on Oct. 17, 2017, 6:52 p.m..The submitted primary amino acid sequence is given in Table T1.

If you use any results in your research, please cite the relevant publications:

Marco Biasini; Stefan Bienert; Andrew Waterhouse; Konstantin Arnold; Gabriel Studer; Tobias Schmidt; Florian Kiefer; Tiziano Gallo Cassarino; Martino Bertoni; Lorenza Bordoli; Torsten Schwede. (2014). SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information. Nucleic Acids Research (1 July 2014) 42 (W1): W252-W258; doi: 10.1093/nar/gku340.
Arnold, K., Bordoli, L., Kopp, J. and Schwede, T. (2006) The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics, 22, 195-201.
Benkert, P., Biasini, M. and Schwede, T. (2011) Toward the estimation of the absolute quality of individual protein structure models. Bioinformatics, 27, 343-350

Results

The SWISS-MODEL template library (SMTL version 2017-10-11, PDB release 2017-10-06) was searched with Blast (Altschul et al., 1997) and HHBlits (Remmert, et al., 2011) for evolutionary related structures matching the target sequence in Table T1. For details on the template search, see Materials and Methods. Overall 400 templates were found (Table T2).

Models

The following models were built (see Materials and Methods "Model Building"):

Model #01

FileBuilt withOligo-StateLigandsGMQEQMEAN
PDB ProMod3 Version 1.0.2. MONOMER
1 x MG: MAGNESIUM ION;
0.890.29
QMEAN0.29
0.70
All Atom0.32
Solvation1.16
Torsion-0.04
TemplateSeq IdentityOligo-stateFound byMethodResolutionSeq SimilarityRangeCoverageDescription
4qf5.1.A74.78monomerBLASTX-ray2.80Å0.52 9 - 466 0.98UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
LigandAdded to ModelDescription
MG
MAGNESIUM ION
ATP✕ - Binding site not conserved.
ADENOSINE-5'-TRIPHOSPHATE
MG✕ - Clashing with protein.
MAGNESIUM ION

Target    MHTSTTSTVPLESWTIEQLQQATQGYWLNDKKPEGQIKRILTDSRHAEAGDTFLALKGERFDAHDFIAQVAEKGCGIAIV
4qf5.1.A --------VPLEPWTAQQLQQATQGYWHKDQIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIV

Target SQPVDADICQLVVEDTRLALGHLGAYRRQQNPQLKVIALTGSSGKTTTKEMLGSILSRLAPTLVTRGNLNNDLGVPMMLL
4qf5.1.A ERPIDAEIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITRGNLNNDLGVPMMLL

Target ELRAEHQYAVMELGASHQGEIDYTSNLVQPHVAGIINIGTAHLGEFGGRDGICRAKSEIYSHI--SETSIVPAADDYAEQ
4qf5.1.A ELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAE

Target IRAAVKTEKTLSFGQGGDVYATDVELHPQSATFTLNTPQGTITVNLPFAGEHNVQNATAAVAFSLAIGISLDDIVAGLEQ
4qf5.1.A IREAAKSHQIMSFGEGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDIVKGLEQ

Target AVGAKGRLNFIPHKDFLFIDDTYNANPSSMRAAAEVLAQQQGIRVMVTGDIGELGSSAAIEHYKLGRDLVSVKGINFVVA
4qf5.1.A AQGAKGRLNFIQKAPHLFIDDTYNANPTSMRAAAQVLLQQNGIKVMVMGDIGELGDSSWQEHHDLGRDLAELP-LDHIVA

Target VGEFAPAAQEGARSTQYGKKMQAFLNQEQALPFLIDLIETHHPQPMSFLFKGSRFAHMETLMAALMEKL
4qf5.1.A VGQFASAALEGA--GLHSTKLKAFQTQAEALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEKL




Model #02

FileBuilt withOligo-StateLigandsGMQEQMEAN
PDB ProMod3 Version 1.0.2. MONOMER
None
0.50-5.03
QMEAN-5.03
-4.69
All Atom-4.26
Solvation-2.11
Torsion-3.87
TemplateSeq IdentityOligo-stateFound byMethodResolutionSeq SimilarityRangeCoverageDescription
1eeh.1.A21.35monomerHHblitsX-ray1.90Å0.30 39 - 449 0.79UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE
LigandAdded to ModelDescription
UMA✕ - Binding site not conserved.
URIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE

Target    MHTSTTSTVPLESWTIEQLQQATQGYWLNDKKPEGQIKRILTDSRHAEAGDTFLALKGER--FDAHDFIAQVAEKGCGIA
1eeh.1.A --------------------------------------PRVMDTRMTPPGLDKLP-EAVERHTGSLN--D-EWLMAADLI

Target IVSQPVDADICQLVVED--TRLALGHLGAYRRQQNPQLKVIALTGSSGKTTTKEMLGSILSRLAPTLVTRGNLNNDLGVP
1eeh.1.A VASPGIALAHPSLSAAADAGIEIVGDIELFCRE-AQ-APIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN----IGLP

Target MMLLELRAEHQYAVMELGASHQGEIDYTSNLVQPHVAGIINIGTAHLGEFG-GRDGICRAKSEIYSHISET-SIVPAADD
1eeh.1.A ALML-LDDECELYVLELSSFQLE---T-TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENA--KVCVVNADDA

Target YAEQIRAAVKTEKTLSFGQG-GDVYATDVELHPQSATFTLNTPQGT--ITVNLPFAGEHNVQNATAAVAFSLAIGISLDD
1eeh.1.A LTMPIRG-ADE-RCVSFGVNMGDYHLNHQQGE--TW-LRV--KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRAS

Target IVAGLEQAVGAKGRLNFIP-HKDFLFIDDTYNANPSSMRAAAEVLAQQQGIRVMVTGDIGELGSSAAIEHYKLGRDLVSV
1eeh.1.A SLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLH-VDGTLHLLLGGDGKSADF-----SPLARYL-NG

Target KGINFVVAVGEFAPAAQEGARSTQYGKKMQAFLNQEQALPFLIDLIETHHPQPMSFLFKGSRFAHMETLMAALMEKL
1eeh.1.A -DNVRLYCFGRDGAQLAALRPE-----VAEQTETMEQAMRLLAPRV-Q---PGDMVLLS------------------




Materials and Methods

Template Search

Template search with Blast and HHBlits has been performed against the SWISS-MODEL template library (SMTL, last update: 2017-10-11, last included PDB release: 2017-10-06).

The target sequence was searched with BLAST (Altschul et al., 1997) against the primary amino acid sequence contained in the SMTL. A total of 22 templates were found.

An initial HHblits profile has been built using the procedure outlined in (Remmert, et al., 2011), followed by 1 iteration of HHblits against NR20. The obtained profile has then be searched against all profiles of the SMTL. A total of 380 templates were found.

Template Selection

For each identified template, the template's quality has been predicted from features of the target-template alignment. The templates with the highest quality have then been selected for model building.

Model Building

Models are built based on the target-template alignment using ProMod3. Coordinates which are conserved between the target and the template are copied from the template to the model. Insertions and deletions are remodelled using a fragment library. Side chains are then rebuilt. Finally, the geometry of the resulting model is regularized by using a force field. In case loop modelling with ProMod3 fails, an alternative model is built with PROMOD-II (Guex, et al., 1997).

Model Quality Estimation

The global and per-residue model quality has been assessed using the QMEAN scoring function (Benkert, et al., 2011) . For improved performance, weights of the individual QMEAN terms have been trained specifically for SWISS-MODEL.

Ligand Modelling

Ligands present in the template structure are transferred by homology to the model when the following criteria are met (Gallo -Casserino, to be published): (a) The ligands are annotated as biologically relevant in the template library, (b) the ligand is in contact with the model, (c) the ligand is not clashing with the protein, (d) the residues in contact with the ligand are conserved between the target and the template. If any of these four criteria is not satisfied, a certain ligand will not be included in the model. The model summary includes information on why and which ligand has not been included.

Oligomeric State Conservation

Homo-oligomeric structure of the target protein is predicted based on the analysis of pairwise interfaces of the identified template structures. For each relevant interface between polypeptide chains (interfaces with more than 10 residue-residue interactions), the QscoreOligomer (Mariani et al., 2011) is predicted from features such as similarity to target and frequency of observing this interface in the identified templates (Kiefer, Bertoni, Biasini, to be published). The prediction is performed with a random forest regressor using these features as input parameters to predict the probability of conservation for each interface. The QscoreOligomer of the whole complex is then calculated as the weight-averaged QscoreOligomer of the interfaces. The oligomeric state of the target is predicted to be the same as in the template when QscoreOligomer is predicted to be higher or equal to 0.5.

References

Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res, 25, 3389-3402.
Remmert, M., Biegert, A., Hauser, A. and Soding, J. (2012) HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment. Nat Methods, 9, 173-175.
Guex, N. and Peitsch, M.C. (1997) SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis, 18, 2714-2723.
Sali, A. and Blundell, T.L. (1993) Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol, 234, 779-815.
Benkert, P., Biasini, M. and Schwede, T. (2011) Toward the estimation of the absolute quality of individual protein structure models. Bioinformatics, 27, 343-350.
Mariani, V., Kiefer, F., Schmidt, T., Haas, J. and Schwede, T. (2011) Assessment of template based protein structure predictions in CASP9. Proteins, 79 Suppl 10, 37-58.

Table T1:

Primary amino acid sequence for which templates were searched and models were built.

MHTSTTSTVPLESWTIEQLQQATQGYWLNDKKPEGQIKRILTDSRHAEAGDTFLALKGERFDAHDFIAQVAEKGCGIAIVSQPVDADICQLVVEDTRLAL
GHLGAYRRQQNPQLKVIALTGSSGKTTTKEMLGSILSRLAPTLVTRGNLNNDLGVPMMLLELRAEHQYAVMELGASHQGEIDYTSNLVQPHVAGIINIGT
AHLGEFGGRDGICRAKSEIYSHISETSIVPAADDYAEQIRAAVKTEKTLSFGQGGDVYATDVELHPQSATFTLNTPQGTITVNLPFAGEHNVQNATAAVA
FSLAIGISLDDIVAGLEQAVGAKGRLNFIPHKDFLFIDDTYNANPSSMRAAAEVLAQQQGIRVMVTGDIGELGSSAAIEHYKLGRDLVSVKGINFVVAVG
EFAPAAQEGARSTQYGKKMQAFLNQEQALPFLIDLIETHHPQPMSFLFKGSRFAHMETLMAALMEKL

Table T2:

TemplateSeq IdentityOligo-stateFound byMethodResolutionSeq SimilarityCoverageDescription
4qf5.1.A74.78monomerBLASTX-ray2.80Å0.520.98UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
4qdi.1.A74.78monomerBLASTX-ray1.80Å0.520.98UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
4ziy.1.A74.78monomerBLASTX-ray1.85Å0.520.98UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
4qf5.1.A72.85monomerHHblitsX-ray2.80Å0.510.97UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
4qdi.1.A72.85monomerHHblitsX-ray1.80Å0.510.97UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
4ziy.1.A72.85monomerHHblitsX-ray1.85Å0.510.97UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
1gg4.1.A42.95monomerHHblitsX-ray2.30Å0.390.94UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,6-DIAMINOPIMELATE-D-ALANYL-D-ALANYL LIGASE
4cvl.1.A43.91monomerBLASTX-ray2.98Å0.400.93UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
4cvm.1.A43.91monomerBLASTX-ray2.06Å0.400.93UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D- ALANINE LIGASE
4cvl.1.A42.47monomerHHblitsX-ray2.98Å0.380.94UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
4cvm.1.A42.47monomerHHblitsX-ray2.06Å0.380.94UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D- ALANINE LIGASE
1gg4.1.A45.32monomerBLASTX-ray2.30Å0.400.89UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,6-DIAMINOPIMELATE-D-ALANYL-D-ALANYL LIGASE
3zm5.1.A28.21monomerHHblitsX-ray2.94Å0.340.93UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
2am2.1.A28.28monomerHHblitsX-ray2.80Å0.340.93UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine ligase, MurF protein
3zl8.1.A31.63monomerBLASTX-ray1.65Å0.350.88UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
4c12.1.A23.53homo-dimerHHblitsX-ray1.80Å0.310.91UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--L-LYSINE LIGASE
3zl8.1.A27.85monomerHHblitsX-ray1.65Å0.330.88UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
4bub.1.A20.38monomerHHblitsX-ray2.90Å0.310.90UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--LD-LYSINE LIGASE
4bub.2.A20.38monomerHHblitsX-ray2.90Å0.310.90UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--LD-LYSINE LIGASE
2xja.1.A20.89monomerHHblitsX-ray3.00Å0.300.91UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE
2wtz.1.A20.89monomerHHblitsX-ray3.00Å0.300.91UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE
1e8c.1.A19.81monomerHHblitsX-ray2.00Å0.290.91UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE
3lk7.1.A20.05monomerHHblitsX-ray1.50Å0.300.83UDP-N-acetylmuramoylalanine--D-glutamate ligase
2am2.1.A32.68monomerBLASTX-ray2.80Å0.360.77UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine ligase, MurF protein
3zm5.1.A32.68monomerBLASTX-ray2.94Å0.360.77UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
5a5f.1.A21.30monomerHHblitsX-ray1.90Å0.300.82UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
2xpc.1.A21.35monomerHHblitsX-ray1.49Å0.300.82UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
2y67.1.A21.28monomerHHblitsX-ray1.85Å0.300.81UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
3hn7.1.A19.69monomerHHblitsX-ray1.65Å0.290.82UDP-N-acetylmuramate-L-alanine ligase
1uag.1.A21.35monomerHHblitsX-ray1.95Å0.300.79UDP-N-ACETYLMURAMOYL-L-ALANINE/:D-GLUTAMATE LIGASE
1eeh.1.A21.35monomerHHblitsX-ray1.90Å0.300.79UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE
2uag.1.A21.35monomerHHblitsX-ray1.70Å0.300.79PROTEIN (UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE)
1e0d.1.A21.35monomerHHblitsX-ray2.40Å0.300.79UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
5a5e.1.A21.35monomerHHblitsX-ray1.84Å0.300.79UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
4buc.1.A14.89monomerHHblitsX-ray2.17Å0.280.81UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
4buc.2.A14.89monomerHHblitsX-ray2.17Å0.280.81UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
2f00.1.A21.39homo-dimerHHblitsX-ray2.50Å0.300.77UDP-N-acetylmuramate--L-alanine ligase
4hv4.1.A22.10monomerHHblitsX-ray2.25Å0.300.76UDP-N-acetylmuramate--L-alanine ligase
4hv4.2.A22.10monomerHHblitsX-ray2.25Å0.300.76UDP-N-acetylmuramate--L-alanine ligase
1p3d.1.A20.96monomerHHblitsX-ray1.70Å0.300.76UDP-N-acetylmuramate--alanine ligase
1gqq.1.A20.96homo-dimerHHblitsX-ray3.10Å0.300.76UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE
1gqq.1.B20.96homo-dimerHHblitsX-ray3.10Å0.300.76UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE
1p31.1.A20.96monomerHHblitsX-ray1.85Å0.300.76UDP-N-acetylmuramate--alanine ligase
1gqy.1.B20.96homo-dimerHHblitsX-ray1.80Å0.300.76UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE
1gqy.1.A20.96homo-dimerHHblitsX-ray1.80Å0.300.76UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE
1j6u.1.A19.60monomerHHblitsX-ray2.30Å0.290.75UDP-N-acetylmuramate-alanine ligase MurC
2gcb.1.A18.71monomerHHblitsX-ray2.30Å0.300.73Folylpolyglutamate synthase
1fgs.1.A18.42monomerHHblitsX-ray2.40Å0.300.73FOLYLPOLYGLUTAMATE SYNTHETASE
1jbw.1.A18.42monomerHHblitsX-ray1.85Å0.300.73FOLYLPOLYGLUTAMATE SYNTHASE
1jbv.1.A18.42monomerHHblitsX-ray1.95Å0.300.73FOLYLPOLYGLUTAMATE SYNTHASE
2gca.1.A18.42monomerHHblitsX-ray2.40Å0.300.73Folylpolyglutamate synthase
2gc5.1.A18.42monomerHHblitsX-ray1.85Å0.290.73Folylpolyglutamate synthase
2gc6.1.A18.42monomerHHblitsX-ray1.90Å0.290.73Folylpolyglutamate synthase
1o5z.1.A18.24monomerHHblitsX-ray2.10Å0.280.73folylpolyglutamate synthase/dihydrofolate synthase
3nrs.1.A21.08monomerHHblitsX-ray1.80Å0.290.71Dihydrofolate:folylpolyglutamate synthetase
3pyz.1.A21.08monomerHHblitsX-ray2.10Å0.290.71Bifunctional folylpolyglutamate synthase/dihydrofolate synthase
2vor.1.A20.97monomerHHblitsX-ray2.30Å0.300.70FOLYLPOLYGLUTAMATE SYNTHASE PROTEIN FOLC
1w7k.1.A20.67monomerHHblitsX-ray2.10Å0.290.70FOLC BIFUNCTIONAL PROTEIN
1w78.1.A20.67monomerHHblitsX-ray1.82Å0.290.70FOLC BIFUNCTIONAL PROTEIN
4c12.1.A31.29homo-dimerBLASTX-ray1.80Å0.350.63UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--L-LYSINE LIGASE
2xpc.1.A31.01monomerBLASTX-ray1.49Å0.350.61UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
2y67.1.A31.01monomerBLASTX-ray1.85Å0.350.61UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
1uag.1.A31.01monomerBLASTX-ray1.95Å0.350.61UDP-N-ACETYLMURAMOYL-L-ALANINE/:D-GLUTAMATE LIGASE
1eeh.1.A31.01monomerBLASTX-ray1.90Å0.350.61UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE
2uag.1.A31.01monomerBLASTX-ray1.70Å0.350.61PROTEIN (UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE)
1e0d.1.A31.01monomerBLASTX-ray2.40Å0.350.61UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
5a5e.1.A31.01monomerBLASTX-ray1.84Å0.350.61UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
5a5f.1.A31.01monomerBLASTX-ray1.90Å0.350.61UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
4bub.1.A27.24monomerBLASTX-ray2.90Å0.340.60UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--LD-LYSINE LIGASE
4bub.2.A27.24monomerBLASTX-ray2.90Å0.340.60UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--LD-LYSINE LIGASE
3lk7.1.A28.51monomerBLASTX-ray1.50Å0.350.53UDP-N-acetylmuramoylalanine--D-glutamate ligase
5vvw.1.A32.23homo-tetramerBLASTX-ray2.30Å0.360.52UDP-N-acetylmuramate--L-alanine ligase
5vvw.1.A26.07homo-tetramerHHblitsX-ray2.30Å0.330.50UDP-N-acetylmuramate--L-alanine ligase
3eag.1.A15.85homo-dimerHHblitsX-ray2.55Å0.280.53UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
3eag.1.B15.85homo-dimerHHblitsX-ray2.55Å0.280.53UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
3mvn.1.A10.94monomerHHblitsX-ray1.90Å0.260.27UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-medo-diaminopimelate ligase
2obn.1.A17.14homo-dimerHHblitsX-ray2.30Å0.290.22Hypothetical protein
2obn.1.B17.14homo-dimerHHblitsX-ray2.30Å0.290.22Hypothetical protein
3cwq.1.A22.09homo-dimerHHblitsX-ray2.47Å0.290.18ParA family chromosome partitioning protein
2lta.1.A10.00monomerHHblitsNMRNA0.270.17De novo designed protein
2jnb.1.A13.24monomerHHblitsNMRNA0.290.15NHP2-like protein 1
1su1.1.A16.42homo-tetramerHHblitsX-ray2.25Å0.290.14Hypothetical protein yfcE
1su1.1.C16.42homo-tetramerHHblitsX-ray2.25Å0.290.14Hypothetical protein yfcE
3wsd.1.A13.43homo-hexamerHHblitsX-ray2.50Å0.270.14Putative GTP cyclohydrolase 1 type 2
2nyd.1.A16.42homo-hexamerHHblitsX-ray2.00Å0.270.14UPF0135 protein SA1388
4iyp.1.B8.70hetero-oligomerHHblitsX-ray2.80Å0.240.15Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
3lnl.1.A16.67homo-hexamerHHblitsX-ray2.00Å0.270.14UPF0135 protein SA1388
1mw7.1.A18.33monomerHHblitsX-ray2.00Å0.280.13HYPOTHETICAL PROTEIN HP0162
4paw.1.A15.52monomerHHblitsX-ray2.23Å0.280.12Orotate phosphoribosyltransferase
4paw.2.A15.52monomerHHblitsX-ray2.23Å0.280.12Orotate phosphoribosyltransferase
3lcx.1.A18.18homo-tetramerHHblitsX-ray1.98Å0.280.12N-acetylneuraminate lyase
4fey.1.A11.32monomerHHblitsX-ray2.30Å0.260.11Phosphoglycerate kinase
4ehj.1.A11.32monomerHHblitsX-ray2.71Å0.260.11Phosphoglycerate kinase
1u32.1.A11.32monomerHHblitsX-ray2.00Å0.250.11Serine/threonine protein phosphatase PP1-gamma catalytic subunit
4v0v.1.A11.54hetero-oligomerHHblitsX-ray1.61Å0.250.11SERINE/THREONINE-PROTEIN PHOSPHATASE PP1-GAMMA CATALYTIC SUBUNIT
5afd.1.A18.37homo-tetramerHHblitsX-ray1.65Å0.270.10N-ACETYLNEURAMINATE LYASE
1rz3.1.A25.00monomerHHblitsX-ray1.90Å0.290.09hypothetical protein RBSTP0775
4jmp.1.A25.71monomerHHblitsX-ray1.30Å0.340.07C-terminal fragment of CapA, Protein tyrosine kinase
3bfv.1.A25.71monomerHHblitsX-ray1.80Å0.340.07Membrane protein CapA1, Protein tyrosine kinase
3la6.1.F22.86homo-octamerHHblitsX-ray3.20Å0.310.07Tyrosine-protein kinase wzc
3la6.1.B22.86homo-octamerHHblitsX-ray3.20Å0.310.07Tyrosine-protein kinase wzc
3la6.1.C22.86homo-octamerHHblitsX-ray3.20Å0.310.07Tyrosine-protein kinase wzc
3la6.1.D22.86homo-octamerHHblitsX-ray3.20Å0.310.07Tyrosine-protein kinase wzc
3la6.1.E22.86homo-octamerHHblitsX-ray3.20Å0.310.07Tyrosine-protein kinase wzc
3la6.1.A22.86homo-octamerHHblitsX-ray3.20Å0.310.07Tyrosine-protein kinase wzc
3la6.1.G22.86homo-octamerHHblitsX-ray3.20Å0.310.07Tyrosine-protein kinase wzc
3la6.1.H22.86homo-octamerHHblitsX-ray3.20Å0.310.07Tyrosine-protein kinase wzc
3la6.2.C22.86homo-octamerHHblitsX-ray3.20Å0.310.07Tyrosine-protein kinase wzc
3do6.1.A40.63homo-tetramerHHblitsX-ray1.85Å0.380.07Formate--tetrahydrofolate ligase
3cio.1.A25.00homo-dimerHHblitsX-ray2.50Å0.350.07Tyrosine-protein kinase etk
3cio.1.B25.00homo-dimerHHblitsX-ray2.50Å0.350.07Tyrosine-protein kinase etk
5j1j.1.A35.48homo-dimerHHblitsX-ray1.55Å0.360.07Site-determining protein
5j1j.1.B35.48homo-dimerHHblitsX-ray1.55Å0.360.07Site-determining protein
5jvf.1.A35.48monomerHHblitsX-ray1.66Å0.360.07Site-determining protein
4jlv.1.A25.00monomerHHblitsX-ray2.20Å0.330.07C-terminal fragment of Membrane protein CapA1, Putative uncharacterized protein capB1
1xjc.1.A27.27monomerHHblitsX-ray2.10Å0.310.07MobB protein homolog
2bek.1.A46.67homo-dimerHHblitsX-ray1.80Å0.380.06SEGREGATION PROTEIN
2ved.1.A21.88homo-octamerHHblitsX-ray2.60Å0.320.07MEMBRANE PROTEIN CAPA1, PROTEIN TYROSINE KINASE
4v02.1.A41.38hetero-oligomerHHblitsX-ray2.70Å0.390.06SITE-DETERMINING PROTEIN
5k5z.1.A36.67homo-dimerHHblitsX-ray2.37Å0.360.06ParA
5k5z.2.A36.67homo-dimerHHblitsX-ray2.37Å0.360.06ParA
5k5z.2.B36.67homo-dimerHHblitsX-ray2.37Å0.360.06ParA
3fwy.1.A40.00homo-dimerHHblitsX-ray1.63Å0.360.06Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
3fwy.1.B40.00homo-dimerHHblitsX-ray1.63Å0.360.06Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
1xd9.1.A26.67homo-dimerHHblitsX-ray2.80Å0.360.06Nitrogenase iron protein 1
4oyh.1.A25.00homo-dimerHHblitsX-ray2.41Å0.310.07Molybdopterin-guanine dinucleotide biosynthesis protein B
4oyh.2.A25.00homo-dimerHHblitsX-ray2.41Å0.310.07Molybdopterin-guanine dinucleotide biosynthesis protein B
4oyh.2.B25.00homo-dimerHHblitsX-ray2.41Å0.310.07Molybdopterin-guanine dinucleotide biosynthesis protein B
4oyh.3.A25.00homo-dimerHHblitsX-ray2.41Å0.310.07Molybdopterin-guanine dinucleotide biosynthesis protein B
4oyh.3.B25.00homo-dimerHHblitsX-ray2.41Å0.310.07Molybdopterin-guanine dinucleotide biosynthesis protein B
4v03.1.A37.93homo-dimerHHblitsX-ray1.90Å0.380.06SITE-DETERMINING PROTEIN
1wcv.1.A44.83homo-dimerHHblitsX-ray1.60Å0.380.06SEGREGATION PROTEIN
2bej.1.A44.83homo-dimerHHblitsX-ray2.10Å0.380.06SEGREGATION PROTEIN
2xj9.1.A29.03homo-dimerHHblitsX-ray2.80Å0.320.07MIPZ
2xj9.1.B29.03homo-dimerHHblitsX-ray2.80Å0.320.07MIPZ
4rz3.1.A33.33homo-dimerHHblitsX-ray1.90Å0.340.06Site-determining protein
4rz3.1.B33.33homo-dimerHHblitsX-ray1.90Å0.340.06Site-determining protein
3zq6.1.A30.00homo-dimerHHblitsX-ray2.11Å0.340.06PUTATIVE ARSENICAL PUMP-DRIVING ATPASE
3zq6.1.B30.00homo-dimerHHblitsX-ray2.11Å0.340.06PUTATIVE ARSENICAL PUMP-DRIVING ATPASE
3zq6.2.A30.00homo-dimerHHblitsX-ray2.11Å0.340.06PUTATIVE ARSENICAL PUMP-DRIVING ATPASE
3zq6.2.B30.00homo-dimerHHblitsX-ray2.11Å0.340.06PUTATIVE ARSENICAL PUMP-DRIVING ATPASE
4nkr.1.A25.81homo-dimerHHblitsX-ray2.41Å0.310.07Molybdopterin-guanine dinucleotide biosynthesis protein B
4nkr.2.A25.81homo-dimerHHblitsX-ray2.41Å0.310.07Molybdopterin-guanine dinucleotide biosynthesis protein B
4nkr.2.B25.81homo-dimerHHblitsX-ray2.41Å0.310.07Molybdopterin-guanine dinucleotide biosynthesis protein B
4nkr.3.A25.81homo-dimerHHblitsX-ray2.41Å0.310.07Molybdopterin-guanine dinucleotide biosynthesis protein B
4nkr.3.B25.81homo-dimerHHblitsX-ray2.41Å0.310.07Molybdopterin-guanine dinucleotide biosynthesis protein B
3ug7.1.A22.58homo-tetramerHHblitsX-ray2.90Å0.310.07arsenical pump-driving ATPase
3ug6.1.A22.58homo-tetramerHHblitsX-ray3.30Å0.310.07arsenical pump-driving ATPase
2oze.1.A19.35homo-dimerHHblitsX-ray1.83Å0.310.07Orf delta'
3r9i.1.B27.59hetero-oligomerHHblitsX-ray2.60Å0.360.06Septum site-determining protein minD
3q9l.1.A27.59homo-dimerHHblitsX-ray2.34Å0.360.06Septum site-determining protein minD
5nco.1.c30.00hetero-oligomerHHblitsEM4.80Å0.330.06Signal recognition particle receptor FtsY
4rz2.1.A30.00monomerHHblitsX-ray2.80Å0.330.06Site-determining protein
2woo.1.A30.00homo-dimerHHblitsX-ray3.01Å0.330.06ATPASE GET3
1rw4.1.A27.59homo-dimerHHblitsX-ray2.50Å0.350.06Nitrogenase iron protein 1
5u1j.1.A34.48homo-dimerHHblitsX-ray2.95Å0.350.06Uncharacterized protein
5u1j.1.B34.48homo-dimerHHblitsX-ray2.95Å0.350.06Uncharacterized protein
5u1j.2.A34.48homo-dimerHHblitsX-ray2.95Å0.350.06Uncharacterized protein
5u1j.2.B34.48homo-dimerHHblitsX-ray2.95Å0.350.06Uncharacterized protein
1g20.1.E27.59hetero-oligomerHHblitsX-ray2.20Å0.350.06NITROGENASE IRON PROTEIN
1g21.1.H27.59hetero-oligomerHHblitsX-ray3.00Å0.350.06NITROGENASE IRON PROTEIN
1g21.1.E27.59hetero-oligomerHHblitsX-ray3.00Å0.350.06NITROGENASE IRON PROTEIN
4c7o.1.B30.00hetero-oligomerHHblitsX-ray2.60Å0.320.06SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY
1hyq.1.A31.03monomerHHblitsX-ray2.60Å0.350.06CELL DIVISION INHIBITOR (MIND-1)
5u1g.1.A42.86hetero-oligomerHHblitsX-ray3.64Å0.380.06ParA
5u1g.2.B42.86hetero-oligomerHHblitsX-ray3.64Å0.380.06ParA
2xj4.1.A26.67monomerHHblitsX-ray1.60Å0.310.06MIPZ
2xit.1.A26.67homo-dimerHHblitsX-ray1.80Å0.310.06MIPZ
3syn.2.A42.86hetero-oligomerHHblitsX-ray3.06Å0.360.06Flagellar biosynthesis protein flhF
2px0.1.B42.86homo-dimerHHblitsX-ray3.00Å0.360.06Flagellar biosynthesis protein flhF
2px0.3.B42.86homo-dimerHHblitsX-ray3.00Å0.360.06Flagellar biosynthesis protein flhF
2px0.4.A42.86homo-dimerHHblitsX-ray3.00Å0.360.06Flagellar biosynthesis protein flhF
2px3.1.A42.86homo-dimerHHblitsX-ray3.20Å0.360.06Flagellar biosynthesis protein flhF
2px0.1.A42.86homo-dimerHHblitsX-ray3.00Å0.360.06Flagellar biosynthesis protein flhF
2xxa.1.B31.03hetero-oligomerHHblitsX-ray3.94Å0.330.06SRP RECEPTOR FTSY
4e07.1.A44.44monomerHHblitsX-ray2.90Å0.380.06Plasmid partitioning protein ParF
4e09.1.A44.44homo-dimerHHblitsX-ray2.99Å0.380.06Plasmid partitioning protein ParF
4e03.1.A44.44monomerHHblitsX-ray2.45Å0.380.06Plasmid partitioning protein ParF
4e03.2.A44.44monomerHHblitsX-ray2.45Å0.380.06Plasmid partitioning protein ParF
4dzz.1.A44.44monomerHHblitsX-ray1.80Å0.380.06Plasmid partitioning protein ParF
4dzz.2.A44.44monomerHHblitsX-ray1.80Å0.380.06Plasmid partitioning protein ParF
3b9q.1.A31.03monomerHHblitsX-ray1.75Å0.320.06Chloroplast SRP receptor homolog, alpha subunit CPFTSY
1qzw.1.B35.71monomerHHblitsX-ray4.10Å0.350.06Signal recognition 54 kDa protein
1qzx.1.A35.71monomerHHblitsX-ray4.00Å0.350.06Signal recognition 54 kDa protein
4wzb.1.F28.57hetero-oligomerHHblitsX-ray2.30Å0.350.06Nitrogenase iron protein 1
4wzb.1.E28.57hetero-oligomerHHblitsX-ray2.30Å0.350.06Nitrogenase iron protein 1
2ynm.1.A40.74hetero-oligomerHHblitsX-ray2.10Å0.380.06LIGHT-INDEPENDENT PROTOCHLOROPHYLLIDE REDUCTASE IRON-SULFUR ATP-BINDING PROTEIN
2ph1.1.A27.59homo-dimerHHblitsX-ray2.70Å0.320.06Nucleotide-binding protein
4c7o.1.A32.14hetero-oligomerHHblitsX-ray2.60Å0.350.06SIGNAL RECOGNITION PARTICLE PROTEIN
4c7o.2.A32.14hetero-oligomerHHblitsX-ray2.60Å0.350.06SIGNAL RECOGNITION PARTICLE PROTEIN
2cnw.1.B37.04hetero-oligomerHHblitsX-ray2.39Å0.370.06CELL DIVISION PROTEIN FTSY
2iyl.1.A37.04monomerHHblitsX-ray2.10Å0.370.06CELL DIVISION PROTEIN FTSY
2cnw.2.B37.04hetero-oligomerHHblitsX-ray2.39Å0.370.06CELL DIVISION PROTEIN FTSY
3fkq.1.A13.33homo-dimerHHblitsX-ray2.10Å0.290.06NtrC-like two-domain protein
2v3c.1.B40.74hetero-oligomerHHblitsX-ray2.50Å0.370.06SIGNAL RECOGNITION 54 KDA PROTEIN
2v3c.2.B40.74hetero-oligomerHHblitsX-ray2.50Å0.370.06SIGNAL RECOGNITION 54 KDA PROTEIN
1a7j.1.A33.33monomerHHblitsX-ray2.50Å0.370.06PHOSPHORIBULOKINASE
1de0.1.A28.57homo-dimerHHblitsX-ray2.40Å0.340.06NITROGENASE IRON PROTEIN
1xcp.1.A28.57homo-dimerHHblitsX-ray3.20Å0.340.06Nitrogenase iron protein 1
1xcp.2.A28.57homo-dimerHHblitsX-ray3.20Å0.340.06Nitrogenase iron protein 1
4pfs.1.A32.14monomerHHblitsX-ray2.30Å0.340.06Cobyrinic Acid a,c-diamide synthase
4pfs.2.A32.14monomerHHblitsX-ray2.30Å0.340.06Cobyrinic Acid a,c-diamide synthase
5if9.1.A32.14monomerHHblitsX-ray1.80Å0.340.06Cobyrinic Acid a,c-diamide synthase
3tqc.1.A42.31homo-dimerHHblitsX-ray2.30Å0.390.06Pantothenate kinase
4f7w.1.B42.31homo-dimerHHblitsX-ray2.10Å0.390.06Pantothenate kinase
4f7w.1.A42.31homo-dimerHHblitsX-ray2.10Å0.390.06Pantothenate kinase
4f7w.3.A42.31homo-dimerHHblitsX-ray2.10Å0.390.06Pantothenate kinase
4f7w.4.B42.31homo-dimerHHblitsX-ray2.10Å0.390.06Pantothenate kinase
4ne2.2.A42.31homo-dimerHHblitsX-ray1.90Å0.390.06Pantothenate kinase
1sq5.1.A42.31homo-dimerHHblitsX-ray2.20Å0.390.06Pantothenate kinase
3ndb.1.B37.04hetero-oligomerHHblitsX-ray3.00Å0.360.06Signal recognition 54 kDa protein
3c8u.1.A33.33monomerHHblitsX-ray1.95Å0.360.06Fructokinase
1zu5.1.A29.63monomerHHblitsX-ray2.40Å0.360.06ftsY
1zu4.1.A29.63monomerHHblitsX-ray1.95Å0.360.06ftsY
2j37.1.G40.74hetero-oligomerHHblitsEM8.00Å0.360.06SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN (SRP54)
4ue5.1.D40.74hetero-oligomerHHblitsEM9.00Å0.360.06SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN
5l3q.1.A40.74hetero-oligomerHHblitsX-ray3.20Å0.360.06Signal recognition particle 54 kDa protein
5gad.1.733.33hetero-oligomerHHblitsEMNA0.360.06Signal recognition particle protein Ffh
2xxa.1.A33.33hetero-oligomerHHblitsX-ray3.94Å0.360.06SIGNAL RECOGNITION PARTICLE PROTEIN
2xxa.2.A33.33hetero-oligomerHHblitsX-ray3.94Å0.360.06SIGNAL RECOGNITION PARTICLE PROTEIN
5gaf.1.733.33hetero-oligomerHHblitsEMNA0.360.06Signal recognition particle protein
3h86.2.A37.04homo-trimerHHblitsX-ray2.50Å0.350.06Adenylate kinase
3h86.1.B37.04homo-trimerHHblitsX-ray2.50Å0.350.06Adenylate kinase
3h86.1.C37.04homo-trimerHHblitsX-ray2.50Å0.350.06Adenylate kinase
3h86.1.A37.04homo-trimerHHblitsX-ray2.50Å0.350.06Adenylate kinase
3a4l.1.A40.74homo-dimerHHblitsX-ray1.80Å0.350.06L-seryl-tRNA(Sec) kinase
3a4l.1.B40.74homo-dimerHHblitsX-ray1.80Å0.350.06L-seryl-tRNA(Sec) kinase
3am1.1.C40.74homo-dimerHHblitsX-ray2.40Å0.350.06L-seryl-tRNA(Sec) kinase
2j7p.1.B38.46hetero-oligomerHHblitsX-ray1.97Å0.380.06CELL DIVISION PROTEIN FTSY
3fmi.1.A25.93homo-dimerHHblitsX-ray2.18Å0.350.06Dethiobiotin synthetase
3fmi.1.B25.93homo-dimerHHblitsX-ray2.18Å0.350.06Dethiobiotin synthetase
3fmf.2.A25.93homo-dimerHHblitsX-ray2.05Å0.350.06Dethiobiotin synthetase
3kl4.1.A37.04hetero-oligomerHHblitsX-ray3.50Å0.350.06Signal recognition 54 kDa protein
1f48.1.A17.24monomerHHblitsX-ray2.30Å0.290.06ARSENITE-TRANSLOCATING ATPASE
5l3w.1.A32.14monomerHHblitsX-ray2.40Å0.320.06Signal recognition particle receptor FtsY
2yzk.1.B21.43homo-dimerHHblitsX-ray1.80Å0.320.06Orotate phosphoribosyltransferase
2yzk.1.A21.43homo-dimerHHblitsX-ray1.80Å0.320.06Orotate phosphoribosyltransferase
5l3q.1.B20.69hetero-oligomerHHblitsX-ray3.20Å0.290.06Signal recognition particle receptor subunit alpha
3kb1.1.A20.69homo-dimerHHblitsX-ray2.90Å0.290.06Nucleotide-binding protein
2j7p.1.A32.14hetero-oligomerHHblitsX-ray1.97Å0.320.06SIGNAL RECOGNITION PARTICLE PROTEIN
3ng1.1.A32.14monomerHHblitsX-ray2.30Å0.320.06SIGNAL SEQUENCE RECOGNITION PROTEIN FFH
2cnw.1.A32.14hetero-oligomerHHblitsX-ray2.39Å0.320.06SIGNAL RECOGNITION PARTICLE PROTEIN
2cnw.3.A32.14hetero-oligomerHHblitsX-ray2.39Å0.320.06SIGNAL RECOGNITION PARTICLE PROTEIN
2xkv.1.A32.14hetero-oligomerHHblitsEM13.50Å0.320.06SIGNAL RECOGNITION PARTICLE PROTEIN
1ion.1.A30.77monomerHHblitsX-ray2.30Å0.370.06PROBABLE CELL DIVISION INHIBITOR MIND
3k9h.1.A34.62homo-dimerHHblitsX-ray2.25Å0.370.06PF-32 protein
3k9g.1.A34.62homo-dimerHHblitsX-ray2.25Å0.370.06PF-32 protein
1j8m.1.A37.04monomerHHblitsX-ray2.00Å0.340.06SIGNAL RECOGNITION 54 KDA PROTEIN
1p9n.1.A28.57homo-dimerHHblitsX-ray2.80Å0.310.06Molybdopterin-guanine dinucleotide biosynthesis protein B
1p9n.1.B28.57homo-dimerHHblitsX-ray2.80Å0.310.06Molybdopterin-guanine dinucleotide biosynthesis protein B
1np6.1.A28.57homo-dimerHHblitsX-ray1.90Å0.310.06Molybdopterin-guanine dinucleotide biosynthesis protein B
1np6.1.B28.57homo-dimerHHblitsX-ray1.90Å0.310.06Molybdopterin-guanine dinucleotide biosynthesis protein B
1okk.1.B38.46hetero-oligomerHHblitsX-ray2.05Å0.370.06CELL DIVISION PROTEIN FTSY
2xkv.1.D38.46hetero-oligomerHHblitsEM13.50Å0.370.06CELL DIVISION PROTEIN FTSY
3dm9.1.A37.04homo-hexamerHHblitsX-ray2.20Å0.340.06Signal recognition particle receptor
3e70.1.A37.04monomerHHblitsX-ray1.97Å0.340.06Signal recognition particle receptor
3dmd.1.F37.04homo-hexamerHHblitsX-ray2.21Å0.340.06Signal recognition particle receptor
3dmd.1.E37.04homo-hexamerHHblitsX-ray2.21Å0.340.06Signal recognition particle receptor
5l3s.1.A33.33hetero-oligomerHHblitsX-ray1.90Å0.340.06Signal recognition particle 54 kDa protein
5l3s.4.A33.33hetero-oligomerHHblitsX-ray1.90Å0.340.06Signal recognition particle 54 kDa protein
4ak9.1.A29.63homo-dimerHHblitsX-ray1.80Å0.340.06CPFTSY
5gad.1.933.33hetero-oligomerHHblitsEMNA0.340.06Signal recognition particle receptor FtsY
2yhs.1.A33.33monomerHHblitsX-ray1.60Å0.340.06CELL DIVISION PROTEIN FTSY
3jaj.45.A42.31monomerHHblitsEMNA0.370.06SRP54
3jan.45.A42.31monomerHHblitsEMNA0.370.06SRP54
5nco.1.934.62hetero-oligomerHHblitsEM4.80Å0.370.06Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein
2j28.1.H34.62hetero-oligomerHHblitsEM8.00Å0.370.06SIGNAL RECOGNITION PARTICLE 54
5l3r.1.A37.04hetero-oligomerHHblitsX-ray2.50Å0.340.06Signal recognition particle 54 kDa protein, chloroplastic
2g0t.1.A29.63homo-dimerHHblitsX-ray2.67Å0.340.06conserved hypothetical protein
1jpj.1.A28.57monomerHHblitsX-ray2.30Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
1jpn.1.A28.57monomerHHblitsX-ray1.90Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
1jpn.2.A28.57monomerHHblitsX-ray1.90Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
3adb.1.A42.31homo-dimerHHblitsX-ray2.80Å0.360.06L-seryl-tRNA(Sec) kinase
3adc.1.B42.31homo-dimerHHblitsX-ray2.90Å0.360.06L-seryl-tRNA(Sec) kinase
3adc.1.A42.31homo-dimerHHblitsX-ray2.90Å0.360.06L-seryl-tRNA(Sec) kinase
3adb.1.B42.31homo-dimerHHblitsX-ray2.80Å0.360.06L-seryl-tRNA(Sec) kinase
3add.1.B42.31homo-dimerHHblitsX-ray2.40Å0.360.06L-seryl-tRNA(Sec) kinase
4wop.1.A25.93homo-dimerHHblitsX-ray2.39Å0.330.06ATP-dependent dethiobiotin synthetase BioD
2qy9.1.A33.33monomerHHblitsX-ray1.90Å0.330.06Cell division protein ftsY
1fts.1.A33.33monomerHHblitsX-ray2.20Å0.330.06FTSY
3dm5.1.A30.77homo-tetramerHHblitsX-ray2.51Å0.360.06Signal recognition 54 kDa protein
3n2i.1.A25.93homo-dimerHHblitsX-ray2.25Å0.330.06Thymidylate kinase
5aun.1.B22.22hetero-oligomerHHblitsX-ray1.63Å0.330.06ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog
3vx3.1.A22.22homo-dimerHHblitsX-ray2.10Å0.330.06ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog
5auq.3.A22.22homo-dimerHHblitsX-ray2.53Å0.330.06ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog
3vx3.1.B22.22homo-dimerHHblitsX-ray2.10Å0.330.06ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog
5l3r.1.B33.33hetero-oligomerHHblitsX-ray2.50Å0.330.06Cell division protein FtsY homolog, chloroplastic
2og2.1.A33.33monomerHHblitsX-ray2.00Å0.330.06Putative signal recognition particle receptor
3of5.1.A21.43homo-dimerHHblitsX-ray1.52Å0.300.06Dethiobiotin synthetase
5l3s.1.B33.33hetero-oligomerHHblitsX-ray1.90Å0.330.06Signal recognition particle receptor FtsY
5l3s.2.B33.33hetero-oligomerHHblitsX-ray1.90Å0.330.06Signal recognition particle receptor FtsY
5l3s.3.B33.33hetero-oligomerHHblitsX-ray1.90Å0.330.06Signal recognition particle receptor FtsY
5l3s.4.B33.33hetero-oligomerHHblitsX-ray1.90Å0.330.06Signal recognition particle receptor FtsY
2pjz.1.A22.22monomerHHblitsX-ray1.90Å0.330.06Hypothetical protein ST1066
1kht.1.A30.77homo-trimerHHblitsX-ray2.50Å0.360.06adenylate kinase
1kht.1.B30.77homo-trimerHHblitsX-ray2.50Å0.360.06adenylate kinase
1kht.1.C30.77homo-trimerHHblitsX-ray2.50Å0.360.06adenylate kinase
1g3r.1.A30.77monomerHHblitsX-ray2.70Å0.360.06CELL DIVISION INHIBITOR
1ki9.1.A29.63homo-trimerHHblitsX-ray2.76Å0.330.06adenylate kinase
1ki9.1.B29.63homo-trimerHHblitsX-ray2.76Å0.330.06adenylate kinase
1ki9.1.C29.63homo-trimerHHblitsX-ray2.76Å0.330.06adenylate kinase
2ax4.1.A37.04homo-dimerHHblitsX-ray2.50Å0.320.06Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthetase 2
1ffh.1.A33.33monomerHHblitsX-ray2.05Å0.320.06FFH
2pbr.1.B38.46homo-dimerHHblitsX-ray1.96Å0.350.06Thymidylate kinase
2pbr.1.A38.46homo-dimerHHblitsX-ray1.96Å0.350.06Thymidylate kinase
4s35.1.B38.46homo-dimerHHblitsX-ray1.55Å0.350.06Thymidylate kinase
5xb2.1.B38.46homo-dimerHHblitsX-ray2.16Å0.350.06Thymidylate kinase
5xbh.1.A38.46homo-dimerHHblitsX-ray2.23Å0.350.06Thymidylate kinase
1dts.1.A25.00homo-dimerHHblitsX-ray1.65Å0.290.06DETHIOBIOTIN SYNTHETASE
5l3v.1.A34.62monomerHHblitsX-ray2.30Å0.350.06Signal recognition particle 54 kDa protein
5l3v.2.A34.62monomerHHblitsX-ray2.30Å0.350.06Signal recognition particle 54 kDa protein
1rj9.1.A40.00hetero-oligomerHHblitsX-ray1.90Å0.380.05Signal Recognition Protein
2q9a.1.A40.00monomerHHblitsX-ray2.24Å0.380.05Cell division protein ftsY
2q9a.2.A40.00monomerHHblitsX-ray2.24Å0.380.05Cell division protein ftsY
1nmy.1.A29.63monomerHHblitsX-ray1.60Å0.320.06similar to THYMIDYLATE KINASE (DTMP KINASE)
1e2e.1.A29.63homo-dimerHHblitsX-ray2.00Å0.320.06THYMIDYLATE KINASE
1e9f.1.A29.63homo-dimerHHblitsX-ray1.90Å0.320.06THYMIDYLATE KINASE
4ohv.1.A29.63monomerHHblitsX-ray2.30Å0.320.06Protein clpf-1
1vma.1.A29.63monomerHHblitsX-ray1.60Å0.320.06cell division protein FtsY
4bzq.1.A25.93homo-dimerHHblitsX-ray2.10Å0.320.06BIFUNCTIONAL ENZYME CYSN/CYSC
1j8y.1.A34.62monomerHHblitsX-ray2.00Å0.340.06SIGNAL RECOGNITION 54 KDA PROTEIN
2ffh.1.A29.63monomerHHblitsX-ray3.20Å0.310.06PROTEIN (FFH)
1rj9.1.B29.63hetero-oligomerHHblitsX-ray1.90Å0.310.06Signal recognition particle protein
2ng1.1.A29.63monomerHHblitsX-ray2.02Å0.310.06SIGNAL SEQUENCE RECOGNITION PROTEIN FFH
1ls1.1.A29.63monomerHHblitsX-ray1.10Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
2j45.1.A29.63monomerHHblitsX-ray1.14Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
2j45.2.A29.63monomerHHblitsX-ray1.14Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
2j46.1.A29.63monomerHHblitsX-ray1.14Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
2j46.2.A29.63monomerHHblitsX-ray1.14Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
1o87.1.A29.63monomerHHblitsX-ray2.10Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
1o87.2.A29.63monomerHHblitsX-ray2.10Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
2c04.1.A29.63monomerHHblitsX-ray1.15Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
2c04.2.A29.63monomerHHblitsX-ray1.15Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
3uwk.1.A26.92monomerHHblitsX-ray1.91Å0.340.06Thymidylate kinase
3uwo.1.A26.92monomerHHblitsX-ray1.70Å0.340.06Thymidylate kinase
1nks.1.C30.77homo-trimerHHblitsX-ray2.57Å0.340.06ADENYLATE KINASE
1nks.1.B30.77homo-trimerHHblitsX-ray2.57Å0.340.06ADENYLATE KINASE
1nks.1.A30.77homo-trimerHHblitsX-ray2.57Å0.340.06ADENYLATE KINASE
2f1r.1.A32.00homo-dimerHHblitsX-ray2.10Å0.370.05molybdopterin-guanine dinucleotide biosynthesis protein B (mobB)
2f1r.1.B32.00homo-dimerHHblitsX-ray2.10Å0.370.05molybdopterin-guanine dinucleotide biosynthesis protein B (mobB)
3mle.1.A19.23homo-dimerHHblitsX-ray2.80Å0.330.06Dethiobiotin synthetase
3hjn.1.A32.00homo-dimerHHblitsX-ray2.10Å0.350.05Thymidylate kinase
3hjn.1.B32.00homo-dimerHHblitsX-ray2.10Å0.350.05Thymidylate kinase
2c03.1.A30.77monomerHHblitsX-ray1.24Å0.320.06SIGNAL RECOGNITION PARTICLE PROTEIN
2c03.2.A30.77monomerHHblitsX-ray1.24Å0.320.06SIGNAL RECOGNITION PARTICLE PROTEIN
4ypn.1.A24.00monomerHHblitsX-ray2.07Å0.350.05Lon protease
1p9r.1.A30.77monomerHHblitsX-ray2.50Å0.320.06General secretion pathway protein E
1xdb.1.A28.00homo-dimerHHblitsX-ray2.80Å0.340.05Nitrogenase iron protein 1
4eaq.1.A30.77homo-dimerHHblitsX-ray1.85Å0.310.06Thymidylate kinase
4dwj.1.B30.77homo-dimerHHblitsX-ray2.74Å0.310.06Thymidylate kinase
2ccg.1.A30.77homo-dimerHHblitsX-ray2.30Å0.310.06THYMIDYLATE KINASE
1dah.1.A26.92homo-dimerHHblitsX-ray1.64Å0.310.06DETHIOBIOTIN SYNTHETASE
1byi.1.A26.92homo-dimerHHblitsX-ray0.97Å0.310.06DETHIOBIOTIN SYNTHASE
4hut.1.A19.23homo-dimerHHblitsX-ray1.95Å0.310.06Cob(I)yrinic acid a,c-diamide adenosyltransferase
4hut.1.B19.23homo-dimerHHblitsX-ray1.95Å0.310.06Cob(I)yrinic acid a,c-diamide adenosyltransferase
3asz.1.A37.50homo-dimerHHblitsX-ray2.25Å0.360.05Uridine kinase
3asy.1.B37.50homo-dimerHHblitsX-ray2.40Å0.360.05Uridine kinase
3asy.1.A37.50homo-dimerHHblitsX-ray2.40Å0.360.05Uridine kinase
3asz.1.B37.50homo-dimerHHblitsX-ray2.25Å0.360.05Uridine kinase
2qmo.1.A20.00homo-dimerHHblitsX-ray1.47Å0.330.05Dethiobiotin synthetase
3ibg.1.A37.50homo-dimerHHblitsX-ray3.20Å0.350.05ATPase, subunit of the Get complex
4mqb.1.A32.00homo-dimerHHblitsX-ray1.55Å0.320.05Thymidylate kinase
4mqb.1.B32.00homo-dimerHHblitsX-ray1.55Å0.320.05Thymidylate kinase
4wza.1.E29.17hetero-oligomerHHblitsX-ray1.90Å0.340.05Nitrogenase iron protein 1
4wza.1.F29.17hetero-oligomerHHblitsX-ray1.90Å0.340.05Nitrogenase iron protein 1
1m34.1.E29.17hetero-oligomerHHblitsX-ray2.30Å0.340.05Nitrogenase Iron Protein 1
1m1y.1.E29.17hetero-oligomerHHblitsX-ray3.20Å0.340.05nitrogenase IRON protein 1
1m1y.1.F29.17hetero-oligomerHHblitsX-ray3.20Å0.340.05nitrogenase IRON protein 1
2afi.1.E29.17hetero-oligomerHHblitsX-ray3.10Å0.340.05Nitrogenase iron protein 1
2afh.1.E29.17hetero-oligomerHHblitsX-ray2.10Å0.340.05Nitrogenase iron protein 1
2afh.1.F29.17hetero-oligomerHHblitsX-ray2.10Å0.340.05Nitrogenase iron protein 1
1g5p.1.A29.17homo-dimerHHblitsX-ray2.20Å0.340.05NITROGENASE IRON PROTEIN
1g5p.1.B29.17homo-dimerHHblitsX-ray2.20Å0.340.05NITROGENASE IRON PROTEIN
1g1m.1.A29.17homo-dimerHHblitsX-ray2.25Å0.340.05NITROGENASE IRON PROTEIN
1g1m.1.B29.17homo-dimerHHblitsX-ray2.25Å0.340.05NITROGENASE IRON PROTEIN
1fp6.1.A29.17homo-dimerHHblitsX-ray2.15Å0.340.05NITROGENASE IRON PROTEIN
1nip.1.A29.17homo-dimerHHblitsX-ray2.90Å0.340.05NITROGENASE IRON PROTEIN
1nip.1.B29.17homo-dimerHHblitsX-ray2.90Å0.340.05NITROGENASE IRON PROTEIN
2c8v.1.A29.17monomerHHblitsX-ray2.50Å0.340.05NITROGENASE IRON PROTEIN 1
5j1s.1.A16.00hetero-oligomerHHblitsX-ray1.40Å0.300.05Torsin-1A
3ez9.1.A28.00homo-dimerHHblitsX-ray2.80Å0.300.05ParA
3ez9.2.A28.00homo-dimerHHblitsX-ray2.80Å0.300.05ParA
3ezf.1.A28.00homo-dimerHHblitsX-ray2.80Å0.300.05ParA
3kjg.2.A29.17homo-dimerHHblitsX-ray2.30Å0.320.05CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
3kjg.1.A29.17monomerHHblitsX-ray2.30Å0.320.05CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
3kji.1.A29.17homo-dimerHHblitsX-ray2.13Å0.320.05CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
3kji.2.A29.17homo-dimerHHblitsX-ray2.13Å0.320.05CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
3kjh.1.A29.17homo-dimerHHblitsX-ray1.90Å0.320.05CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
3kje.1.A29.17monomerHHblitsX-ray2.30Å0.320.05CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
3adk.1.A34.78monomerHHblitsX-ray2.10Å0.350.05ADENYLATE KINASE
4bs1.1.B16.67hetero-oligomerHHblitsEM18.00Å0.310.05TRANSCRIPTIONAL REGULATOR (NTRC FAMILY)
1z83.1.A30.43homo-dimerHHblitsX-ray1.90Å0.340.05Adenylate kinase 1
2c95.1.A30.43monomerHHblitsX-ray1.71Å0.340.05ADENYLATE KINASE 1
1cp2.1.A34.78homo-dimerHHblitsX-ray1.93Å0.340.05NITROGENASE IRON PROTEIN
1cp2.1.B34.78homo-dimerHHblitsX-ray1.93Å0.340.05NITROGENASE IRON PROTEIN
2qor.1.A20.83monomerHHblitsX-ray1.80Å0.300.05Guanylate kinase
4eun.1.A26.09homo-dimerHHblitsX-ray1.60Å0.330.05thermoresistant glucokinase
3hdt.1.A21.74homo-dimerHHblitsX-ray2.79Å0.300.05putative kinase
3hdt.1.B21.74homo-dimerHHblitsX-ray2.79Å0.300.05putative kinase
3co5.1.A15.00homo-dimerHHblitsX-ray2.40Å0.250.04Putative two-component system transcriptional response regulator