SWISS-MODEL Homology Modelling Report

Model Building Report

This document lists the results for the homology modelling project "D0CCM9" submitted to SWISS-MODEL workspace on Oct. 17, 2017, 6:54 p.m..The submitted primary amino acid sequence is given in Table T1.

If you use any results in your research, please cite the relevant publications:

Marco Biasini; Stefan Bienert; Andrew Waterhouse; Konstantin Arnold; Gabriel Studer; Tobias Schmidt; Florian Kiefer; Tiziano Gallo Cassarino; Martino Bertoni; Lorenza Bordoli; Torsten Schwede. (2014). SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information. Nucleic Acids Research (1 July 2014) 42 (W1): W252-W258; doi: 10.1093/nar/gku340.
Arnold, K., Bordoli, L., Kopp, J. and Schwede, T. (2006) The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics, 22, 195-201.
Benkert, P., Biasini, M. and Schwede, T. (2011) Toward the estimation of the absolute quality of individual protein structure models. Bioinformatics, 27, 343-350

Results

The SWISS-MODEL template library (SMTL version 2017-10-11, PDB release 2017-10-06) was searched with Blast (Altschul et al., 1997) and HHBlits (Remmert, et al., 2011) for evolutionary related structures matching the target sequence in Table T1. For details on the template search, see Materials and Methods. Overall 439 templates were found (Table T2).

Models

The following models were built (see Materials and Methods "Model Building"):

Model #01

FileBuilt withOligo-StateLigandsGMQEQMEAN
PDB ProMod3 Version 1.0.2. MONOMER
1 x ATP: ADENOSINE-5'-TRIPHOSPHATE;
1 x MG: MAGNESIUM ION;
0.980.56
QMEAN0.56
1.34
All Atom0.52
Solvation1.30
Torsion0.10
TemplateSeq IdentityOligo-stateFound byMethodResolutionSeq SimilarityRangeCoverageDescription
4qf5.1.A99.14monomerHHblitsX-ray2.80Å0.60 7 - 465 1.00UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
LigandAdded to ModelDescription
ATP
ADENOSINE-5'-TRIPHOSPHATE
MG
MAGNESIUM ION
MG✕ - Clashing with protein.
MAGNESIUM ION

Target    MHTSTTSTVPLEPWTAQQLQQATQGYWHKDQIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIV
4qf5.1.A MHTSTTSTVPLEPWTAQQLQQATQGYWHKDQIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIV

Target ERPIDAEIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITRGNLNNDLGVPMMLL
4qf5.1.A ERPIDAEIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITRGNLNNDLGVPMMLL

Target ELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEFGGRDGICRAKSEIYHHILPQGVAIIPQQDDFTAE
4qf5.1.A ELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAE

Target IREAAKSHQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDIVKGLEQ
4qf5.1.A IREAAKSHQIMSFGEGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDIVKGLEQ

Target AQGAKGRLNFIQKAPHLFIDDTYNANPTSMRAAAQVLLQQNGIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAV
4qf5.1.A AQGAKGRLNFIQKAPHLFIDDTYNANPTSMRAAAQVLLQQNGIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAV

Target GQFASAALEGAGLHSTKLKAFQTQAEALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEKL
4qf5.1.A GQFASAALEGAGLHSTKLKAFQTQAEALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEKL




Model #02

FileBuilt withOligo-StateLigandsGMQEQMEAN
PDB ProMod3 Version 1.0.2. MONOMER
None
0.51-4.70
QMEAN-4.70
-4.77
All Atom-4.40
Solvation-2.18
Torsion-3.50
TemplateSeq IdentityOligo-stateFound byMethodResolutionSeq SimilarityRangeCoverageDescription
1eeh.1.A23.12monomerHHblitsX-ray1.90Å0.31 38 - 448 0.80UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE
LigandAdded to ModelDescription
UMA✕ - Binding site not conserved.
URIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE

Target    MHTSTTSTVPLEPWTAQQLQQATQGYWHKDQIPQTEIKRILTDSRHAESGDAFLALKGER--FDAHNFVAQVAANGCQVA
1eeh.1.A -------------------------------------TPRVMDTRMTPPGLDKLP-EAVERHTGSLN--D-EWLMAADLI

Target IVERPIDAEIAQLVVAD--TRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITRGNLNNDLGVP
1eeh.1.A VASPGIALAHPSLSAAADAGIEIVGDIELFCRE--AQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN----IGLP

Target MMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEFG-GRDGICRAKSEIYHHILPQGVAIIPQQD
1eeh.1.A ALML-LDDECELYVLELSSFQLE----TTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVVNADD

Target DFTAEIREAAKSHQIMSFG-AGGDVFATEIELLPQSANFQLHTPQGS--SFVRLPFAGEHNVQNATAAVAFALALGVSLE
1eeh.1.A ALTMPIRG-A-DERCVSFGVNMGDYHLNHQQGE--TW-LRV--KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRA

Target DIVKGLEQAQGAKGRLNFIQKAPHL-FIDDTYNANPTSMRAAAQVLLQQNGIKVMVMGDIGELGDSSWQEHHDLGRDLAE
1eeh.1.A SSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLH-VDGTLHLLLGGDGKSAD-----FSPLARYLNG

Target LPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAEALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEKL
1eeh.1.A D-NVRLYCFGRDGAQLAALRPEVAEQTETMEQ-------AMRLLAPRVQPGDMVLLS------------------




Materials and Methods

Template Search

Template search with Blast and HHBlits has been performed against the SWISS-MODEL template library (SMTL, last update: 2017-10-11, last included PDB release: 2017-10-06).

The target sequence was searched with BLAST (Altschul et al., 1997) against the primary amino acid sequence contained in the SMTL. A total of 24 templates were found.

An initial HHblits profile has been built using the procedure outlined in (Remmert, et al., 2011), followed by 1 iteration of HHblits against NR20. The obtained profile has then be searched against all profiles of the SMTL. A total of 420 templates were found.

Template Selection

For each identified template, the template's quality has been predicted from features of the target-template alignment. The templates with the highest quality have then been selected for model building.

Model Building

Models are built based on the target-template alignment using ProMod3. Coordinates which are conserved between the target and the template are copied from the template to the model. Insertions and deletions are remodelled using a fragment library. Side chains are then rebuilt. Finally, the geometry of the resulting model is regularized by using a force field. In case loop modelling with ProMod3 fails, an alternative model is built with PROMOD-II (Guex, et al., 1997).

Model Quality Estimation

The global and per-residue model quality has been assessed using the QMEAN scoring function (Benkert, et al., 2011) . For improved performance, weights of the individual QMEAN terms have been trained specifically for SWISS-MODEL.

Ligand Modelling

Ligands present in the template structure are transferred by homology to the model when the following criteria are met (Gallo -Casserino, to be published): (a) The ligands are annotated as biologically relevant in the template library, (b) the ligand is in contact with the model, (c) the ligand is not clashing with the protein, (d) the residues in contact with the ligand are conserved between the target and the template. If any of these four criteria is not satisfied, a certain ligand will not be included in the model. The model summary includes information on why and which ligand has not been included.

Oligomeric State Conservation

Homo-oligomeric structure of the target protein is predicted based on the analysis of pairwise interfaces of the identified template structures. For each relevant interface between polypeptide chains (interfaces with more than 10 residue-residue interactions), the QscoreOligomer (Mariani et al., 2011) is predicted from features such as similarity to target and frequency of observing this interface in the identified templates (Kiefer, Bertoni, Biasini, to be published). The prediction is performed with a random forest regressor using these features as input parameters to predict the probability of conservation for each interface. The QscoreOligomer of the whole complex is then calculated as the weight-averaged QscoreOligomer of the interfaces. The oligomeric state of the target is predicted to be the same as in the template when QscoreOligomer is predicted to be higher or equal to 0.5.

References

Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res, 25, 3389-3402.
Remmert, M., Biegert, A., Hauser, A. and Soding, J. (2012) HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment. Nat Methods, 9, 173-175.
Guex, N. and Peitsch, M.C. (1997) SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis, 18, 2714-2723.
Sali, A. and Blundell, T.L. (1993) Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol, 234, 779-815.
Benkert, P., Biasini, M. and Schwede, T. (2011) Toward the estimation of the absolute quality of individual protein structure models. Bioinformatics, 27, 343-350.
Mariani, V., Kiefer, F., Schmidt, T., Haas, J. and Schwede, T. (2011) Assessment of template based protein structure predictions in CASP9. Proteins, 79 Suppl 10, 37-58.

Table T1:

Primary amino acid sequence for which templates were searched and models were built.

MHTSTTSTVPLEPWTAQQLQQATQGYWHKDQIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAEIAQLVVADTRLAL
GQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGT
AHLGEFGGRDGICRAKSEIYHHILPQGVAIIPQQDDFTAEIREAAKSHQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAA
VAFALALGVSLEDIVKGLEQAQGAKGRLNFIQKAPHLFIDDTYNANPTSMRAAAQVLLQQNGIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAV
GQFASAALEGAGLHSTKLKAFQTQAEALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEKL

Table T2:

TemplateSeq IdentityOligo-stateFound byMethodResolutionSeq SimilarityCoverageDescription
4ziy.1.A99.14monomerHHblitsX-ray1.85Å0.601.00UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
4qf5.1.A99.14monomerHHblitsX-ray2.80Å0.601.00UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
4qdi.1.A99.14monomerHHblitsX-ray1.80Å0.601.00UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
1gg4.1.A40.14monomerHHblitsX-ray2.30Å0.380.95UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,6-DIAMINOPIMELATE-D-ALANYL-D-ALANYL LIGASE
4cvl.1.A42.27monomerHHblitsX-ray2.98Å0.380.94UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
4cvm.1.A42.27monomerHHblitsX-ray2.06Å0.380.94UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D- ALANINE LIGASE
1gg4.1.A43.41monomerBLASTX-ray2.30Å0.400.89UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,6-DIAMINOPIMELATE-D-ALANYL-D-ALANYL LIGASE
4cvl.1.A44.79monomerBLASTX-ray2.98Å0.400.89UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
4cvm.1.A44.79monomerBLASTX-ray2.06Å0.400.89UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D- ALANINE LIGASE
3zm5.1.A28.28monomerHHblitsX-ray2.94Å0.340.93UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
2am2.1.A28.34monomerHHblitsX-ray2.80Å0.340.93UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine ligase, MurF protein
3zl8.1.A32.35monomerBLASTX-ray1.65Å0.360.88UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
3zl8.1.A28.50monomerHHblitsX-ray1.65Å0.340.89UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
2xja.1.A20.46monomerHHblitsX-ray3.00Å0.290.93UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE
2wtz.1.A20.46monomerHHblitsX-ray3.00Å0.290.93UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE
4c12.1.A22.70homo-dimerHHblitsX-ray1.80Å0.310.91UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--L-LYSINE LIGASE
4bub.1.A21.72monomerHHblitsX-ray2.90Å0.310.90UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--LD-LYSINE LIGASE
4bub.2.A21.72monomerHHblitsX-ray2.90Å0.310.90UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--LD-LYSINE LIGASE
1e8c.1.A21.19monomerHHblitsX-ray2.00Å0.300.90UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE
2am2.1.A31.67monomerBLASTX-ray2.80Å0.360.77UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine ligase, MurF protein
3zm5.1.A31.67monomerBLASTX-ray2.94Å0.360.77UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
2xpc.1.A23.06monomerHHblitsX-ray1.49Å0.310.83UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
3lk7.1.A20.26monomerHHblitsX-ray1.50Å0.300.84UDP-N-acetylmuramoylalanine--D-glutamate ligase
2y67.1.A23.08monomerHHblitsX-ray1.85Å0.310.81UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
5a5f.1.A23.14monomerHHblitsX-ray1.90Å0.310.81UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
1uag.1.A23.12monomerHHblitsX-ray1.95Å0.310.80UDP-N-ACETYLMURAMOYL-L-ALANINE/:D-GLUTAMATE LIGASE
1eeh.1.A23.12monomerHHblitsX-ray1.90Å0.310.80UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE
2uag.1.A23.12monomerHHblitsX-ray1.70Å0.310.80PROTEIN (UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE)
1e0d.1.A23.12monomerHHblitsX-ray2.40Å0.310.80UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
5a5e.1.A23.12monomerHHblitsX-ray1.84Å0.310.80UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
3hn7.1.A19.00monomerHHblitsX-ray1.65Å0.280.81UDP-N-acetylmuramate-L-alanine ligase
4buc.1.A14.36monomerHHblitsX-ray2.17Å0.280.81UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
4buc.2.A14.36monomerHHblitsX-ray2.17Å0.280.81UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
2f00.1.A22.07homo-dimerHHblitsX-ray2.50Å0.310.77UDP-N-acetylmuramate--L-alanine ligase
1p3d.1.A20.51monomerHHblitsX-ray1.70Å0.300.75UDP-N-acetylmuramate--alanine ligase
1gqq.1.A20.51homo-dimerHHblitsX-ray3.10Å0.300.75UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE
1gqq.1.B20.51homo-dimerHHblitsX-ray3.10Å0.300.75UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE
1p31.1.A20.51monomerHHblitsX-ray1.85Å0.300.75UDP-N-acetylmuramate--alanine ligase
1gqy.1.B20.51homo-dimerHHblitsX-ray1.80Å0.300.75UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE
1gqy.1.A20.51homo-dimerHHblitsX-ray1.80Å0.300.75UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE
4hv4.1.A22.79monomerHHblitsX-ray2.25Å0.300.75UDP-N-acetylmuramate--L-alanine ligase
4hv4.2.A22.79monomerHHblitsX-ray2.25Å0.300.75UDP-N-acetylmuramate--L-alanine ligase
1j6u.1.A18.57monomerHHblitsX-ray2.30Å0.290.75UDP-N-acetylmuramate-alanine ligase MurC
2vor.1.A21.07monomerHHblitsX-ray2.30Å0.300.72FOLYLPOLYGLUTAMATE SYNTHASE PROTEIN FOLC
1o5z.1.A19.29monomerHHblitsX-ray2.10Å0.290.72folylpolyglutamate synthase/dihydrofolate synthase
2gc5.1.A16.27monomerHHblitsX-ray1.85Å0.290.73Folylpolyglutamate synthase
2gcb.1.A16.27monomerHHblitsX-ray2.30Å0.290.73Folylpolyglutamate synthase
2gc6.1.A16.27monomerHHblitsX-ray1.90Å0.280.73Folylpolyglutamate synthase
2gca.1.A16.32monomerHHblitsX-ray2.40Å0.280.72Folylpolyglutamate synthase
1fgs.1.A16.32monomerHHblitsX-ray2.40Å0.280.72FOLYLPOLYGLUTAMATE SYNTHETASE
1jbw.1.A16.32monomerHHblitsX-ray1.85Å0.280.72FOLYLPOLYGLUTAMATE SYNTHASE
1jbv.1.A16.32monomerHHblitsX-ray1.95Å0.280.72FOLYLPOLYGLUTAMATE SYNTHASE
1w7k.1.A20.00monomerHHblitsX-ray2.10Å0.290.71FOLC BIFUNCTIONAL PROTEIN
1w78.1.A20.00monomerHHblitsX-ray1.82Å0.290.71FOLC BIFUNCTIONAL PROTEIN
4c12.1.A30.49homo-dimerBLASTX-ray1.80Å0.340.65UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--L-LYSINE LIGASE
3nrs.1.A19.94monomerHHblitsX-ray1.80Å0.290.70Dihydrofolate:folylpolyglutamate synthetase
3pyz.1.A19.94monomerHHblitsX-ray2.10Å0.290.70Bifunctional folylpolyglutamate synthase/dihydrofolate synthase
4bub.1.A28.07monomerBLASTX-ray2.90Å0.350.61UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--LD-LYSINE LIGASE
4bub.2.A28.07monomerBLASTX-ray2.90Å0.350.61UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--LD-LYSINE LIGASE
4hv4.1.A34.69monomerBLASTX-ray2.25Å0.360.58UDP-N-acetylmuramate--L-alanine ligase
4hv4.2.A34.69monomerBLASTX-ray2.25Å0.360.58UDP-N-acetylmuramate--L-alanine ligase
3lk7.1.A27.88monomerBLASTX-ray1.50Å0.340.58UDP-N-acetylmuramoylalanine--D-glutamate ligase
2xpc.1.A30.58monomerBLASTX-ray1.49Å0.350.52UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
2y67.1.A30.58monomerBLASTX-ray1.85Å0.350.52UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
5vvw.1.A31.69homo-tetramerBLASTX-ray2.30Å0.350.52UDP-N-acetylmuramate--L-alanine ligase
5vvw.1.A27.54homo-tetramerHHblitsX-ray2.30Å0.330.51UDP-N-acetylmuramate--L-alanine ligase
3eag.1.A17.27homo-dimerHHblitsX-ray2.55Å0.280.53UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
3eag.1.B17.27homo-dimerHHblitsX-ray2.55Å0.280.53UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
1uag.1.A32.14monomerBLASTX-ray1.95Å0.370.36UDP-N-ACETYLMURAMOYL-L-ALANINE/:D-GLUTAMATE LIGASE
1eeh.1.A32.14monomerBLASTX-ray1.90Å0.370.36UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE
2uag.1.A32.14monomerBLASTX-ray1.70Å0.370.36PROTEIN (UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE)
1e0d.1.A32.14monomerBLASTX-ray2.40Å0.370.36UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
5a5e.1.A32.14monomerBLASTX-ray1.84Å0.370.36UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
5a5f.1.A32.14monomerBLASTX-ray1.90Å0.370.36UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
3mvn.1.A15.20monomerHHblitsX-ray1.90Å0.270.27UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-medo-diaminopimelate ligase
2obn.1.A18.69homo-dimerHHblitsX-ray2.30Å0.290.23Hypothetical protein
2obn.1.B18.69homo-dimerHHblitsX-ray2.30Å0.290.23Hypothetical protein
2lrh.1.A7.32monomerHHblitsNMRNA0.260.18De novo designed protein
2lci.1.A7.32monomerHHblitsNMRNA0.260.18Protein OR36
2l69.1.A11.11monomerHHblitsNMRNA0.260.17Rossmann 2x3 fold protein
2mr6.1.A9.76monomerHHblitsNMRNA0.250.18De novo designed Protein OR462
2mr5.1.A8.54monomerHHblitsNMRNA0.230.18De novo designed Protein OR457
4j29.1.A8.64homo-dimerHHblitsX-ray2.10Å0.240.17Engineered Protein OR258
5gaj.1.A8.64monomerHHblitsNMRNA0.240.17DE NOVO DESIGNED PROTEIN OR258
2lta.1.A11.69monomerHHblitsNMRNA0.250.17De novo designed protein
3qw4.1.B15.49homo-tetramerHHblitsX-ray3.00Å0.250.15UMP synthase
3qw4.1.A15.49homo-tetramerHHblitsX-ray3.00Å0.250.15UMP synthase
3wsd.1.A11.94homo-hexamerHHblitsX-ray2.50Å0.270.14Putative GTP cyclohydrolase 1 type 2
1su1.1.A15.38homo-tetramerHHblitsX-ray2.25Å0.280.14Hypothetical protein yfcE
1su1.1.C15.38homo-tetramerHHblitsX-ray2.25Å0.280.14Hypothetical protein yfcE
2nyd.1.A13.43homo-hexamerHHblitsX-ray2.00Å0.260.14UPF0135 protein SA1388
3lnl.1.A13.43homo-hexamerHHblitsX-ray2.00Å0.260.14UPF0135 protein SA1388
4iyp.1.B11.76hetero-oligomerHHblitsX-ray2.80Å0.240.15Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
1uf3.1.A9.52homo-octamerHHblitsX-ray2.10Å0.260.14hypothetical protein TT1561
1uf3.1.C9.52homo-octamerHHblitsX-ray2.10Å0.260.14hypothetical protein TT1561
2r94.1.A18.33homo-tetramerHHblitsX-ray2.20Å0.260.132-Keto-3-deoxy-(6-phospho-)gluconate aldolase
2nux.1.A17.24homo-tetramerHHblitsX-ray2.50Å0.270.122-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate aldolase
2yda.1.A14.04homo-tetramerHHblitsX-ray1.91Å0.280.122-KETO-3-DEOXY GLUCONATE ALDOLASE
1w3n.1.A14.04homo-tetramerHHblitsX-ray2.10Å0.280.122-KETO-3-DEOXY GLUCONATE ALDOLASE
1w3i.1.A14.04homo-tetramerHHblitsX-ray1.70Å0.280.122-KETO-3-DEOXY GLUCONATE ALDOLASE
3lcg.1.A25.93homo-tetramerHHblitsX-ray1.78Å0.310.12N-acetylneuraminate lyase
3lcx.1.A25.93homo-tetramerHHblitsX-ray1.98Å0.300.12N-acetylneuraminate lyase
5ekz.1.A3.39monomerHHblitsX-ray2.00Å0.230.13Translational activator of cytochrome c oxidase 1
3lci.1.A26.00homo-tetramerHHblitsX-ray2.12Å0.300.11N-acetylneuraminate lyase
5afd.1.A20.00homo-tetramerHHblitsX-ray1.65Å0.280.11N-ACETYLNEURAMINATE LYASE
4mpq.1.A12.00homo-hexamerHHblitsX-ray1.75Å0.260.11Dihydrodipicolinate synthetase
2hmc.1.A10.00homo-hexamerHHblitsX-ray1.90Å0.250.11Dihydrodipicolinate synthase
5czj.1.A10.00monomerHHblitsX-ray1.92Å0.250.11Dihydrodipicolinate synthase
1rz3.1.A24.44monomerHHblitsX-ray1.90Å0.290.10hypothetical protein RBSTP0775
5mvr.1.A25.64monomerHHblitsX-ray1.76Å0.320.08tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
1xjc.1.A26.47monomerHHblitsX-ray2.10Å0.300.07MobB protein homolog
2bek.1.A44.83homo-dimerHHblitsX-ray1.80Å0.380.06SEGREGATION PROTEIN
1wcv.1.A44.83homo-dimerHHblitsX-ray1.60Å0.380.06SEGREGATION PROTEIN
2bej.1.A44.83homo-dimerHHblitsX-ray2.10Å0.380.06SEGREGATION PROTEIN
4oyh.1.A25.81homo-dimerHHblitsX-ray2.41Å0.310.07Molybdopterin-guanine dinucleotide biosynthesis protein B
4oyh.2.A25.81homo-dimerHHblitsX-ray2.41Å0.310.07Molybdopterin-guanine dinucleotide biosynthesis protein B
4oyh.2.B25.81homo-dimerHHblitsX-ray2.41Å0.310.07Molybdopterin-guanine dinucleotide biosynthesis protein B
4oyh.3.A25.81homo-dimerHHblitsX-ray2.41Å0.310.07Molybdopterin-guanine dinucleotide biosynthesis protein B
4oyh.3.B25.81homo-dimerHHblitsX-ray2.41Å0.310.07Molybdopterin-guanine dinucleotide biosynthesis protein B
4nkr.1.A25.81homo-dimerHHblitsX-ray2.41Å0.310.07Molybdopterin-guanine dinucleotide biosynthesis protein B
4nkr.2.A25.81homo-dimerHHblitsX-ray2.41Å0.310.07Molybdopterin-guanine dinucleotide biosynthesis protein B
4nkr.2.B25.81homo-dimerHHblitsX-ray2.41Å0.310.07Molybdopterin-guanine dinucleotide biosynthesis protein B
4nkr.3.A25.81homo-dimerHHblitsX-ray2.41Å0.310.07Molybdopterin-guanine dinucleotide biosynthesis protein B
4nkr.3.B25.81homo-dimerHHblitsX-ray2.41Å0.310.07Molybdopterin-guanine dinucleotide biosynthesis protein B
3cio.1.A24.14homo-dimerHHblitsX-ray2.50Å0.360.06Tyrosine-protein kinase etk
3cio.1.B24.14homo-dimerHHblitsX-ray2.50Å0.360.06Tyrosine-protein kinase etk
1p9n.1.A25.81homo-dimerHHblitsX-ray2.80Å0.290.07Molybdopterin-guanine dinucleotide biosynthesis protein B
1p9n.1.B25.81homo-dimerHHblitsX-ray2.80Å0.290.07Molybdopterin-guanine dinucleotide biosynthesis protein B
1np6.1.A25.81homo-dimerHHblitsX-ray1.90Å0.290.07Molybdopterin-guanine dinucleotide biosynthesis protein B
1np6.1.B25.81homo-dimerHHblitsX-ray1.90Å0.290.07Molybdopterin-guanine dinucleotide biosynthesis protein B
4v02.1.A40.74hetero-oligomerHHblitsX-ray2.70Å0.400.06SITE-DETERMINING PROTEIN
3fwy.1.A39.29homo-dimerHHblitsX-ray1.63Å0.360.06Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
3fwy.1.B39.29homo-dimerHHblitsX-ray1.63Å0.360.06Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
3la6.1.F27.59homo-octamerHHblitsX-ray3.20Å0.330.06Tyrosine-protein kinase wzc
3la6.1.B27.59homo-octamerHHblitsX-ray3.20Å0.330.06Tyrosine-protein kinase wzc
3la6.1.C27.59homo-octamerHHblitsX-ray3.20Å0.330.06Tyrosine-protein kinase wzc
3la6.1.D27.59homo-octamerHHblitsX-ray3.20Å0.330.06Tyrosine-protein kinase wzc
3la6.1.E27.59homo-octamerHHblitsX-ray3.20Å0.330.06Tyrosine-protein kinase wzc
3la6.1.A27.59homo-octamerHHblitsX-ray3.20Å0.330.06Tyrosine-protein kinase wzc
3la6.1.G27.59homo-octamerHHblitsX-ray3.20Å0.330.06Tyrosine-protein kinase wzc
3la6.1.H27.59homo-octamerHHblitsX-ray3.20Å0.330.06Tyrosine-protein kinase wzc
3la6.2.C27.59homo-octamerHHblitsX-ray3.20Å0.330.06Tyrosine-protein kinase wzc
3ndb.1.B39.29hetero-oligomerHHblitsX-ray3.00Å0.360.06Signal recognition 54 kDa protein
5j1j.1.A39.29homo-dimerHHblitsX-ray1.55Å0.360.06Site-determining protein
5j1j.1.B39.29homo-dimerHHblitsX-ray1.55Å0.360.06Site-determining protein
5jvf.1.A39.29monomerHHblitsX-ray1.66Å0.360.06Site-determining protein
4rz3.1.A31.03homo-dimerHHblitsX-ray1.90Å0.330.06Site-determining protein
4rz3.1.B31.03homo-dimerHHblitsX-ray1.90Å0.330.06Site-determining protein
3syn.2.A42.86hetero-oligomerHHblitsX-ray3.06Å0.360.06Flagellar biosynthesis protein flhF
2px0.1.B42.86homo-dimerHHblitsX-ray3.00Å0.360.06Flagellar biosynthesis protein flhF
2px0.3.B42.86homo-dimerHHblitsX-ray3.00Å0.360.06Flagellar biosynthesis protein flhF
2px0.4.A42.86homo-dimerHHblitsX-ray3.00Å0.360.06Flagellar biosynthesis protein flhF
2px3.1.A42.86homo-dimerHHblitsX-ray3.20Å0.360.06Flagellar biosynthesis protein flhF
2px0.1.A42.86homo-dimerHHblitsX-ray3.00Å0.360.06Flagellar biosynthesis protein flhF
3md0.1.A31.03homo-dimerHHblitsX-ray2.45Å0.330.06Arginine/ornithine transport system ATPase
1rw4.1.A28.57homo-dimerHHblitsX-ray2.50Å0.350.06Nitrogenase iron protein 1
5u1g.1.A44.44hetero-oligomerHHblitsX-ray3.64Å0.380.06ParA
5u1g.2.B44.44hetero-oligomerHHblitsX-ray3.64Å0.380.06ParA
4e07.1.A44.44monomerHHblitsX-ray2.90Å0.380.06Plasmid partitioning protein ParF
4e09.1.A44.44homo-dimerHHblitsX-ray2.99Å0.380.06Plasmid partitioning protein ParF
4e03.1.A44.44monomerHHblitsX-ray2.45Å0.380.06Plasmid partitioning protein ParF
4e03.2.A44.44monomerHHblitsX-ray2.45Å0.380.06Plasmid partitioning protein ParF
4dzz.1.A44.44monomerHHblitsX-ray1.80Å0.380.06Plasmid partitioning protein ParF
4dzz.2.A44.44monomerHHblitsX-ray1.80Å0.380.06Plasmid partitioning protein ParF
4v03.1.A37.04homo-dimerHHblitsX-ray1.90Å0.380.06SITE-DETERMINING PROTEIN
5gaf.1.732.14hetero-oligomerHHblitsEMNA0.350.06Signal recognition particle protein
2ynm.1.A40.74hetero-oligomerHHblitsX-ray2.10Å0.380.06LIGHT-INDEPENDENT PROTOCHLOROPHYLLIDE REDUCTASE IRON-SULFUR ATP-BINDING PROTEIN
1zu5.1.A28.57monomerHHblitsX-ray2.40Å0.350.06ftsY
1zu4.1.A28.57monomerHHblitsX-ray1.95Å0.350.06ftsY
3a4l.1.A39.29homo-dimerHHblitsX-ray1.80Å0.350.06L-seryl-tRNA(Sec) kinase
3a4l.1.B39.29homo-dimerHHblitsX-ray1.80Å0.350.06L-seryl-tRNA(Sec) kinase
3am1.1.C39.29homo-dimerHHblitsX-ray2.40Å0.350.06L-seryl-tRNA(Sec) kinase
4c7o.1.A32.14hetero-oligomerHHblitsX-ray2.60Å0.350.06SIGNAL RECOGNITION PARTICLE PROTEIN
4c7o.2.A32.14hetero-oligomerHHblitsX-ray2.60Å0.350.06SIGNAL RECOGNITION PARTICLE PROTEIN
2j37.1.G39.29hetero-oligomerHHblitsEM8.00Å0.350.06SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN (SRP54)
5l3q.1.A39.29hetero-oligomerHHblitsX-ray3.20Å0.350.06Signal recognition particle 54 kDa protein
4ue5.1.D39.29hetero-oligomerHHblitsEM9.00Å0.350.06SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN
4rz2.1.A27.59monomerHHblitsX-ray2.80Å0.320.06Site-determining protein
2cnw.1.B37.04hetero-oligomerHHblitsX-ray2.39Å0.370.06CELL DIVISION PROTEIN FTSY
2iyl.1.A37.04monomerHHblitsX-ray2.10Å0.370.06CELL DIVISION PROTEIN FTSY
2cnw.2.B37.04hetero-oligomerHHblitsX-ray2.39Å0.370.06CELL DIVISION PROTEIN FTSY
2j7p.1.B37.04hetero-oligomerHHblitsX-ray1.97Å0.370.06CELL DIVISION PROTEIN FTSY
3k9h.1.A33.33homo-dimerHHblitsX-ray2.25Å0.370.06PF-32 protein
3k9g.1.A33.33homo-dimerHHblitsX-ray2.25Å0.370.06PF-32 protein
5k5z.1.A37.04homo-dimerHHblitsX-ray2.37Å0.370.06ParA
5k5z.2.A37.04homo-dimerHHblitsX-ray2.37Å0.370.06ParA
5k5z.2.B37.04homo-dimerHHblitsX-ray2.37Å0.370.06ParA
4jlv.1.A17.24monomerHHblitsX-ray2.20Å0.310.06C-terminal fragment of Membrane protein CapA1, Putative uncharacterized protein capB1
4jmp.1.A20.69monomerHHblitsX-ray1.30Å0.310.06C-terminal fragment of CapA, Protein tyrosine kinase
3bfv.1.A20.69monomerHHblitsX-ray1.80Å0.310.06Membrane protein CapA1, Protein tyrosine kinase
2v3c.1.B40.74hetero-oligomerHHblitsX-ray2.50Å0.370.06SIGNAL RECOGNITION 54 KDA PROTEIN
2v3c.2.B40.74hetero-oligomerHHblitsX-ray2.50Å0.370.06SIGNAL RECOGNITION 54 KDA PROTEIN
3fmi.1.A25.00homo-dimerHHblitsX-ray2.18Å0.340.06Dethiobiotin synthetase
3fmi.1.B25.00homo-dimerHHblitsX-ray2.18Å0.340.06Dethiobiotin synthetase
3fmf.2.A25.00homo-dimerHHblitsX-ray2.05Å0.340.06Dethiobiotin synthetase
3kl4.1.A35.71hetero-oligomerHHblitsX-ray3.50Å0.340.06Signal recognition 54 kDa protein
1ion.1.A29.63monomerHHblitsX-ray2.30Å0.370.06PROBABLE CELL DIVISION INHIBITOR MIND
1a7j.1.A33.33monomerHHblitsX-ray2.50Å0.370.06PHOSPHORIBULOKINASE
3tqc.1.A42.31homo-dimerHHblitsX-ray2.30Å0.390.06Pantothenate kinase
4f7w.1.B42.31homo-dimerHHblitsX-ray2.10Å0.390.06Pantothenate kinase
4f7w.1.A42.31homo-dimerHHblitsX-ray2.10Å0.390.06Pantothenate kinase
4f7w.3.A42.31homo-dimerHHblitsX-ray2.10Å0.390.06Pantothenate kinase
4f7w.4.B42.31homo-dimerHHblitsX-ray2.10Å0.390.06Pantothenate kinase
4ne2.2.A42.31homo-dimerHHblitsX-ray1.90Å0.390.06Pantothenate kinase
1sq5.1.A42.31homo-dimerHHblitsX-ray2.20Å0.390.06Pantothenate kinase
1esm.1.A42.31homo-dimerHHblitsX-ray2.50Å0.390.06PANTOTHENATE KINASE
1esm.1.B42.31homo-dimerHHblitsX-ray2.50Å0.390.06PANTOTHENATE KINASE
1esn.1.A42.31homo-dimerHHblitsX-ray2.60Å0.390.06PANTOTHENATE KINASE
1esn.1.B42.31homo-dimerHHblitsX-ray2.60Å0.390.06PANTOTHENATE KINASE
1esn.2.B42.31homo-dimerHHblitsX-ray2.60Å0.390.06PANTOTHENATE KINASE
2xxa.1.A33.33hetero-oligomerHHblitsX-ray3.94Å0.360.06SIGNAL RECOGNITION PARTICLE PROTEIN
2xxa.2.A33.33hetero-oligomerHHblitsX-ray3.94Å0.360.06SIGNAL RECOGNITION PARTICLE PROTEIN
5nco.1.933.33hetero-oligomerHHblitsEM4.80Å0.360.06Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein
5gad.1.733.33hetero-oligomerHHblitsEMNA0.360.06Signal recognition particle protein Ffh
2j28.1.H33.33hetero-oligomerHHblitsEM8.00Å0.360.06SIGNAL RECOGNITION PARTICLE 54
5l3r.1.A35.71hetero-oligomerHHblitsX-ray2.50Å0.330.06Signal recognition particle 54 kDa protein, chloroplastic
4ak9.1.A28.57homo-dimerHHblitsX-ray1.80Å0.330.06CPFTSY
1j8m.1.A35.71monomerHHblitsX-ray2.00Å0.330.06SIGNAL RECOGNITION 54 KDA PROTEIN
2xxa.1.B32.14hetero-oligomerHHblitsX-ray3.94Å0.330.06SRP RECEPTOR FTSY
5nco.1.c32.14hetero-oligomerHHblitsEM4.80Å0.330.06Signal recognition particle receptor FtsY
2qy9.1.A32.14monomerHHblitsX-ray1.90Å0.330.06Cell division protein ftsY
1hyq.1.A33.33monomerHHblitsX-ray2.60Å0.360.06CELL DIVISION INHIBITOR (MIND-1)
3c8u.1.A33.33monomerHHblitsX-ray1.95Å0.360.06Fructokinase
2ved.1.A17.24homo-octamerHHblitsX-ray2.60Å0.300.06MEMBRANE PROTEIN CAPA1, PROTEIN TYROSINE KINASE
3dm9.1.A35.71homo-hexamerHHblitsX-ray2.20Å0.330.06Signal recognition particle receptor
3e70.1.A35.71monomerHHblitsX-ray1.97Å0.330.06Signal recognition particle receptor
3dmd.1.F35.71homo-hexamerHHblitsX-ray2.21Å0.330.06Signal recognition particle receptor
3dmd.1.E35.71homo-hexamerHHblitsX-ray2.21Å0.330.06Signal recognition particle receptor
5l3r.1.B32.14hetero-oligomerHHblitsX-ray2.50Å0.330.06Cell division protein FtsY homolog, chloroplastic
3b9q.1.A32.14monomerHHblitsX-ray1.75Å0.330.06Chloroplast SRP receptor homolog, alpha subunit CPFTSY
2og2.1.A32.14monomerHHblitsX-ray2.00Å0.330.06Putative signal recognition particle receptor
2g0t.1.A28.57homo-dimerHHblitsX-ray2.67Å0.330.06conserved hypothetical protein
3jaj.45.A40.74monomerHHblitsEMNA0.350.06SRP54
3jan.45.A40.74monomerHHblitsEMNA0.350.06SRP54
5u1j.1.A33.33homo-dimerHHblitsX-ray2.95Å0.350.06Uncharacterized protein
5u1j.1.B33.33homo-dimerHHblitsX-ray2.95Å0.350.06Uncharacterized protein
5u1j.2.A33.33homo-dimerHHblitsX-ray2.95Å0.350.06Uncharacterized protein
5u1j.2.B33.33homo-dimerHHblitsX-ray2.95Å0.350.06Uncharacterized protein
1de0.1.A29.63homo-dimerHHblitsX-ray2.40Å0.350.06NITROGENASE IRON PROTEIN
1xcp.1.A29.63homo-dimerHHblitsX-ray3.20Å0.350.06Nitrogenase iron protein 1
1xcp.2.A29.63homo-dimerHHblitsX-ray3.20Å0.350.06Nitrogenase iron protein 1
4wzb.1.F29.63hetero-oligomerHHblitsX-ray2.30Å0.350.06Nitrogenase iron protein 1
4wzb.1.E29.63hetero-oligomerHHblitsX-ray2.30Å0.350.06Nitrogenase iron protein 1
3adb.1.A40.74homo-dimerHHblitsX-ray2.80Å0.350.06L-seryl-tRNA(Sec) kinase
3adc.1.B40.74homo-dimerHHblitsX-ray2.90Å0.350.06L-seryl-tRNA(Sec) kinase
3adc.1.A40.74homo-dimerHHblitsX-ray2.90Å0.350.06L-seryl-tRNA(Sec) kinase
3adb.1.B40.74homo-dimerHHblitsX-ray2.80Å0.350.06L-seryl-tRNA(Sec) kinase
3add.1.B40.74homo-dimerHHblitsX-ray2.40Å0.350.06L-seryl-tRNA(Sec) kinase
2ph1.1.A28.57homo-dimerHHblitsX-ray2.70Å0.320.06Nucleotide-binding protein
3dm5.1.A29.63homo-tetramerHHblitsX-ray2.51Å0.350.06Signal recognition 54 kDa protein
1g20.1.E29.63hetero-oligomerHHblitsX-ray2.20Å0.350.06NITROGENASE IRON PROTEIN
1g21.1.H29.63hetero-oligomerHHblitsX-ray3.00Å0.350.06NITROGENASE IRON PROTEIN
1g21.1.E29.63hetero-oligomerHHblitsX-ray3.00Å0.350.06NITROGENASE IRON PROTEIN
3r9i.1.B25.93hetero-oligomerHHblitsX-ray2.60Å0.350.06Septum site-determining protein minD
3q9l.1.A25.93homo-dimerHHblitsX-ray2.34Å0.350.06Septum site-determining protein minD
5aun.1.B21.43hetero-oligomerHHblitsX-ray1.63Å0.320.06ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog
3vx3.1.A21.43homo-dimerHHblitsX-ray2.10Å0.320.06ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog
5auq.3.A21.43homo-dimerHHblitsX-ray2.53Å0.320.06ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog
3vx3.1.B21.43homo-dimerHHblitsX-ray2.10Å0.320.06ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog
4c7o.1.B32.14hetero-oligomerHHblitsX-ray2.60Å0.320.06SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY
5l3v.1.A37.04monomerHHblitsX-ray2.30Å0.350.06Signal recognition particle 54 kDa protein
5l3v.2.A37.04monomerHHblitsX-ray2.30Å0.350.06Signal recognition particle 54 kDa protein
1qzw.1.B37.04monomerHHblitsX-ray4.10Å0.350.06Signal recognition 54 kDa protein
1qzx.1.A37.04monomerHHblitsX-ray4.00Å0.350.06Signal recognition 54 kDa protein
1g3r.1.A29.63monomerHHblitsX-ray2.70Å0.350.06CELL DIVISION INHIBITOR
5l3s.1.B32.14hetero-oligomerHHblitsX-ray1.90Å0.320.06Signal recognition particle receptor FtsY
5l3s.2.B32.14hetero-oligomerHHblitsX-ray1.90Å0.320.06Signal recognition particle receptor FtsY
5l3s.3.B32.14hetero-oligomerHHblitsX-ray1.90Å0.320.06Signal recognition particle receptor FtsY
5l3s.4.B32.14hetero-oligomerHHblitsX-ray1.90Å0.320.06Signal recognition particle receptor FtsY
2pbr.1.B37.04homo-dimerHHblitsX-ray1.96Å0.340.06Thymidylate kinase
2pbr.1.A37.04homo-dimerHHblitsX-ray1.96Å0.340.06Thymidylate kinase
4s35.1.B37.04homo-dimerHHblitsX-ray1.55Å0.340.06Thymidylate kinase
5xb2.1.B37.04homo-dimerHHblitsX-ray2.16Å0.340.06Thymidylate kinase
5xbh.1.A37.04homo-dimerHHblitsX-ray2.23Å0.340.06Thymidylate kinase
2ax4.1.A35.71homo-dimerHHblitsX-ray2.50Å0.310.06Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthetase 2
2xj4.1.A28.57monomerHHblitsX-ray1.60Å0.310.06MIPZ
2xit.1.A28.57homo-dimerHHblitsX-ray1.80Å0.310.06MIPZ
2xj9.1.A28.57homo-dimerHHblitsX-ray2.80Å0.310.06MIPZ
2xj9.1.B28.57homo-dimerHHblitsX-ray2.80Å0.310.06MIPZ
1okk.1.B38.46hetero-oligomerHHblitsX-ray2.05Å0.370.06CELL DIVISION PROTEIN FTSY
2xkv.1.D38.46hetero-oligomerHHblitsEM13.50Å0.370.06CELL DIVISION PROTEIN FTSY
1rj9.1.A38.46hetero-oligomerHHblitsX-ray1.90Å0.370.06Signal Recognition Protein
1e9c.1.A28.57homo-dimerHHblitsX-ray1.60Å0.310.06THYMIDYLATE KINASE
2xx3.1.A28.57homo-dimerHHblitsX-ray2.00Å0.310.06THYMIDYLATE KINASE
5l3w.1.A32.14monomerHHblitsX-ray2.40Å0.310.06Signal recognition particle receptor FtsY
1vma.1.A28.57monomerHHblitsX-ray1.60Å0.310.06cell division protein FtsY
5l3s.1.A33.33hetero-oligomerHHblitsX-ray1.90Å0.340.06Signal recognition particle 54 kDa protein
5l3s.4.A33.33hetero-oligomerHHblitsX-ray1.90Å0.340.06Signal recognition particle 54 kDa protein
5gad.1.933.33hetero-oligomerHHblitsEMNA0.340.06Signal recognition particle receptor FtsY
2yhs.1.A33.33monomerHHblitsX-ray1.60Å0.340.06CELL DIVISION PROTEIN FTSY
1fts.1.A33.33monomerHHblitsX-ray2.20Å0.340.06FTSY
1xd9.1.A29.63homo-dimerHHblitsX-ray2.80Å0.340.06Nitrogenase iron protein 1
3h86.2.A38.46homo-trimerHHblitsX-ray2.50Å0.360.06Adenylate kinase
3h86.1.B38.46homo-trimerHHblitsX-ray2.50Å0.360.06Adenylate kinase
3h86.1.C38.46homo-trimerHHblitsX-ray2.50Å0.360.06Adenylate kinase
3h86.1.A38.46homo-trimerHHblitsX-ray2.50Å0.360.06Adenylate kinase
4wop.1.A25.93homo-dimerHHblitsX-ray2.39Å0.330.06ATP-dependent dethiobiotin synthetase BioD
2ofx.1.A32.14homo-dimerHHblitsX-ray1.90Å0.300.06Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthetase 1
3avo.1.A34.62homo-dimerHHblitsX-ray2.55Å0.360.06Pantothenate kinase
3n2i.1.A25.93homo-dimerHHblitsX-ray2.25Å0.330.06Thymidylate kinase
1j8y.1.A33.33monomerHHblitsX-ray2.00Å0.330.06SIGNAL RECOGNITION 54 KDA PROTEIN
3of5.1.A21.43homo-dimerHHblitsX-ray1.52Å0.300.06Dethiobiotin synthetase
3ug7.1.A25.00homo-tetramerHHblitsX-ray2.90Å0.300.06arsenical pump-driving ATPase
3ug6.1.A25.00homo-tetramerHHblitsX-ray3.30Å0.300.06arsenical pump-driving ATPase
2oze.1.A17.86homo-dimerHHblitsX-ray1.83Å0.300.06Orf delta'
4gmd.1.B25.93homo-dimerHHblitsX-ray1.98Å0.330.06Thymidylate kinase
4gmd.1.A25.93homo-dimerHHblitsX-ray1.98Å0.330.06Thymidylate kinase
4edh.1.A25.93homo-dimerHHblitsX-ray1.32Å0.330.06Thymidylate kinase
4e5u.1.A25.93homo-dimerHHblitsX-ray1.81Å0.330.06Thymidylate kinase
4e5u.1.B25.93homo-dimerHHblitsX-ray1.81Å0.330.06Thymidylate kinase
3uxm.1.A25.93monomerHHblitsX-ray1.95Å0.330.06Thymidylate kinase
3uxm.2.A25.93monomerHHblitsX-ray1.95Å0.330.06Thymidylate kinase
3uwk.1.A25.93monomerHHblitsX-ray1.91Å0.330.06Thymidylate kinase
3uwo.1.A25.93monomerHHblitsX-ray1.70Å0.330.06Thymidylate kinase
2pjz.1.A22.22monomerHHblitsX-ray1.90Å0.330.06Hypothetical protein ST1066
1kht.1.A30.77homo-trimerHHblitsX-ray2.50Å0.360.06adenylate kinase
1kht.1.B30.77homo-trimerHHblitsX-ray2.50Å0.360.06adenylate kinase
1kht.1.C30.77homo-trimerHHblitsX-ray2.50Å0.360.06adenylate kinase
1e98.1.A29.63homo-dimerHHblitsX-ray1.90Å0.320.06THYMIDYLATE KINASE
1nmy.1.A29.63monomerHHblitsX-ray1.60Å0.320.06similar to THYMIDYLATE KINASE (DTMP KINASE)
1e2e.1.A29.63homo-dimerHHblitsX-ray2.00Å0.320.06THYMIDYLATE KINASE
2woo.1.A29.63homo-dimerHHblitsX-ray3.01Å0.320.06ATPASE GET3
1ffh.1.A33.33monomerHHblitsX-ray2.05Å0.320.06FFH
2j7p.1.A33.33hetero-oligomerHHblitsX-ray1.97Å0.320.06SIGNAL RECOGNITION PARTICLE PROTEIN
3ng1.1.A33.33monomerHHblitsX-ray2.30Å0.320.06SIGNAL SEQUENCE RECOGNITION PROTEIN FFH
2cnw.1.A33.33hetero-oligomerHHblitsX-ray2.39Å0.320.06SIGNAL RECOGNITION PARTICLE PROTEIN
2cnw.3.A33.33hetero-oligomerHHblitsX-ray2.39Å0.320.06SIGNAL RECOGNITION PARTICLE PROTEIN
2xkv.1.A33.33hetero-oligomerHHblitsEM13.50Å0.320.06SIGNAL RECOGNITION PARTICLE PROTEIN
5xb5.1.A38.46homo-dimerHHblitsX-ray2.23Å0.350.06Thymidylate kinase
1dts.1.A25.00homo-dimerHHblitsX-ray1.65Å0.290.06DETHIOBIOTIN SYNTHETASE
4ypn.1.A23.08monomerHHblitsX-ray2.07Å0.350.06Lon protease
3fkq.1.A14.29homo-dimerHHblitsX-ray2.10Å0.290.06NtrC-like two-domain protein
3kb1.1.A21.43homo-dimerHHblitsX-ray2.90Å0.290.06Nucleotide-binding protein
2q9a.1.A40.00monomerHHblitsX-ray2.24Å0.380.05Cell division protein ftsY
2q9a.2.A40.00monomerHHblitsX-ray2.24Å0.380.05Cell division protein ftsY
3hjn.1.A30.77homo-dimerHHblitsX-ray2.10Å0.350.06Thymidylate kinase
3hjn.1.B30.77homo-dimerHHblitsX-ray2.10Å0.350.06Thymidylate kinase
3zq6.1.A22.22homo-dimerHHblitsX-ray2.11Å0.320.06PUTATIVE ARSENICAL PUMP-DRIVING ATPASE
3zq6.1.B22.22homo-dimerHHblitsX-ray2.11Å0.320.06PUTATIVE ARSENICAL PUMP-DRIVING ATPASE
3zq6.2.A22.22homo-dimerHHblitsX-ray2.11Å0.320.06PUTATIVE ARSENICAL PUMP-DRIVING ATPASE
3zq6.2.B22.22homo-dimerHHblitsX-ray2.11Å0.320.06PUTATIVE ARSENICAL PUMP-DRIVING ATPASE
2i3b.1.A30.77monomerHHblitsNMRNA0.340.06Human Cancer-Related NTPase
2ffh.1.A29.63monomerHHblitsX-ray3.20Å0.310.06PROTEIN (FFH)
2ng1.1.A29.63monomerHHblitsX-ray2.02Å0.310.06SIGNAL SEQUENCE RECOGNITION PROTEIN FFH
1rj9.1.B29.63hetero-oligomerHHblitsX-ray1.90Å0.310.06Signal recognition particle protein
2c03.1.A29.63monomerHHblitsX-ray1.24Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
2c03.2.A29.63monomerHHblitsX-ray1.24Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
1jpj.1.A29.63monomerHHblitsX-ray2.30Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
1jpn.1.A29.63monomerHHblitsX-ray1.90Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
1jpn.2.A29.63monomerHHblitsX-ray1.90Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
1ls1.1.A29.63monomerHHblitsX-ray1.10Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
2j45.1.A29.63monomerHHblitsX-ray1.14Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
2j45.2.A29.63monomerHHblitsX-ray1.14Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
2j46.1.A29.63monomerHHblitsX-ray1.14Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
2j46.2.A29.63monomerHHblitsX-ray1.14Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
1o87.1.A29.63monomerHHblitsX-ray2.10Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
1o87.2.A29.63monomerHHblitsX-ray2.10Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
2c04.1.A29.63monomerHHblitsX-ray1.15Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
2c04.2.A29.63monomerHHblitsX-ray1.15Å0.310.06SIGNAL RECOGNITION PARTICLE PROTEIN
4unq.1.A30.77monomerHHblitsX-ray2.30Å0.340.06THYMIDYLATE KINASE
4unq.2.A30.77monomerHHblitsX-ray2.30Å0.340.06THYMIDYLATE KINASE
4unp.1.A30.77monomerHHblitsX-ray2.30Å0.340.06THYMIDYLATE KINASE
1nks.1.C30.77homo-trimerHHblitsX-ray2.57Å0.340.06ADENYLATE KINASE
1nks.1.B30.77homo-trimerHHblitsX-ray2.57Å0.340.06ADENYLATE KINASE
1nks.1.A30.77homo-trimerHHblitsX-ray2.57Å0.340.06ADENYLATE KINASE
4eaq.1.A29.63homo-dimerHHblitsX-ray1.85Å0.310.06Thymidylate kinase
4dwj.1.B29.63homo-dimerHHblitsX-ray2.74Å0.310.06Thymidylate kinase
1ki9.1.A30.77homo-trimerHHblitsX-ray2.76Å0.340.06adenylate kinase
1ki9.1.B30.77homo-trimerHHblitsX-ray2.76Å0.340.06adenylate kinase
1ki9.1.C30.77homo-trimerHHblitsX-ray2.76Å0.340.06adenylate kinase
3io3.1.A25.93monomerHHblitsX-ray1.80Å0.310.06DEHA2D07832p
2f1r.1.A32.00homo-dimerHHblitsX-ray2.10Å0.370.05molybdopterin-guanine dinucleotide biosynthesis protein B (mobB)
2f1r.1.B32.00homo-dimerHHblitsX-ray2.10Å0.370.05molybdopterin-guanine dinucleotide biosynthesis protein B (mobB)
5cb6.3.B38.46homo-dimerHHblitsX-ray2.79Å0.330.06Probable adenylyl-sulfate kinase
5cb6.2.B38.46homo-dimerHHblitsX-ray2.79Å0.330.06Probable adenylyl-sulfate kinase
4pfs.1.A30.77monomerHHblitsX-ray2.30Å0.330.06Cobyrinic Acid a,c-diamide synthase
4pfs.2.A30.77monomerHHblitsX-ray2.30Å0.330.06Cobyrinic Acid a,c-diamide synthase
5if9.1.A30.77monomerHHblitsX-ray1.80Å0.330.06Cobyrinic Acid a,c-diamide synthase
3mle.1.A19.23homo-dimerHHblitsX-ray2.80Å0.330.06Dethiobiotin synthetase
1dah.1.A25.93homo-dimerHHblitsX-ray1.64Å0.300.06DETHIOBIOTIN SYNTHETASE
1byi.1.A25.93homo-dimerHHblitsX-ray0.97Å0.300.06DETHIOBIOTIN SYNTHASE
2qmo.1.A19.23homo-dimerHHblitsX-ray1.47Å0.330.06Dethiobiotin synthetase
5l3q.1.B22.22hetero-oligomerHHblitsX-ray3.20Å0.290.06Signal recognition particle receptor subunit alpha
1p9r.1.A30.77monomerHHblitsX-ray2.50Å0.320.06General secretion pathway protein E
2ccg.1.A30.77homo-dimerHHblitsX-ray2.30Å0.310.06THYMIDYLATE KINASE
4cvn.1.A43.48hetero-oligomerHHblitsX-ray2.12Å0.400.05PUTATIVE ADENYLATE KINASE
3ez9.1.A26.92homo-dimerHHblitsX-ray2.80Å0.300.06ParA
3ez9.2.A26.92homo-dimerHHblitsX-ray2.80Å0.300.06ParA
3ezf.1.A26.92homo-dimerHHblitsX-ray2.80Å0.300.06ParA
3ez7.1.A24.00homo-dimerHHblitsX-ray2.92Å0.330.05Plasmid partition protein A
1htw.1.A24.00monomerHHblitsX-ray1.70Å0.330.05HI0065
1htw.2.A24.00monomerHHblitsX-ray1.70Å0.330.05HI0065
1htw.3.A24.00monomerHHblitsX-ray1.70Å0.330.05HI0065
1fl9.1.A24.00monomerHHblitsX-ray2.50Å0.330.05HYPOTHETICAL PROTEIN HI0065
1fl9.2.A24.00monomerHHblitsX-ray2.50Å0.330.05HYPOTHETICAL PROTEIN HI0065
1fl9.3.A24.00monomerHHblitsX-ray2.50Å0.330.05HYPOTHETICAL PROTEIN HI0065
4mqb.1.A32.00homo-dimerHHblitsX-ray1.55Å0.320.05Thymidylate kinase
4mqb.1.B32.00homo-dimerHHblitsX-ray1.55Å0.320.05Thymidylate kinase
5j1s.1.A16.00hetero-oligomerHHblitsX-ray1.40Å0.300.05Torsin-1A
2qor.1.A20.00monomerHHblitsX-ray1.80Å0.300.05Guanylate kinase
3ez6.1.A25.00homo-dimerHHblitsX-ray2.58Å0.320.05Plasmid partition protein A
3ez6.1.B25.00homo-dimerHHblitsX-ray2.58Å0.320.05Plasmid partition protein A
3ez2.1.B25.00homo-dimerHHblitsX-ray2.05Å0.320.05Plasmid partition protein A
1xdb.1.A30.43homo-dimerHHblitsX-ray2.80Å0.340.05Nitrogenase iron protein 1
4wza.1.E30.43hetero-oligomerHHblitsX-ray1.90Å0.340.05Nitrogenase iron protein 1
4wza.1.F30.43hetero-oligomerHHblitsX-ray1.90Å0.340.05Nitrogenase iron protein 1
1m34.1.E30.43hetero-oligomerHHblitsX-ray2.30Å0.340.05Nitrogenase Iron Protein 1
1m1y.1.E30.43hetero-oligomerHHblitsX-ray3.20Å0.340.05nitrogenase IRON protein 1
1m1y.1.F30.43hetero-oligomerHHblitsX-ray3.20Å0.340.05nitrogenase IRON protein 1
2afi.1.E30.43hetero-oligomerHHblitsX-ray3.10Å0.340.05Nitrogenase iron protein 1
2afh.1.E30.43hetero-oligomerHHblitsX-ray2.10Å0.340.05Nitrogenase iron protein 1
2afh.1.F30.43hetero-oligomerHHblitsX-ray2.10Å0.340.05Nitrogenase iron protein 1
1g5p.1.A30.43homo-dimerHHblitsX-ray2.20Å0.340.05NITROGENASE IRON PROTEIN
1g5p.1.B30.43homo-dimerHHblitsX-ray2.20Å0.340.05NITROGENASE IRON PROTEIN
1g1m.1.A30.43homo-dimerHHblitsX-ray2.25Å0.340.05NITROGENASE IRON PROTEIN
1g1m.1.B30.43homo-dimerHHblitsX-ray2.25Å0.340.05NITROGENASE IRON PROTEIN
1fp6.1.A30.43homo-dimerHHblitsX-ray2.15Å0.340.05NITROGENASE IRON PROTEIN
1nip.1.A30.43homo-dimerHHblitsX-ray2.90Å0.340.05NITROGENASE IRON PROTEIN
1nip.1.B30.43homo-dimerHHblitsX-ray2.90Å0.340.05NITROGENASE IRON PROTEIN
2c8v.1.A30.43monomerHHblitsX-ray2.50Å0.340.05NITROGENASE IRON PROTEIN 1
1s96.1.A16.00homo-dimerHHblitsX-ray2.00Å0.270.05Guanylate kinase
1cp2.1.A34.78homo-dimerHHblitsX-ray1.93Å0.340.05NITROGENASE IRON PROTEIN
1cp2.1.B34.78homo-dimerHHblitsX-ray1.93Å0.340.05NITROGENASE IRON PROTEIN
4eun.1.A26.09homo-dimerHHblitsX-ray1.60Å0.330.05thermoresistant glucokinase
2grj.1.A42.86monomerHHblitsX-ray2.60Å0.390.05Dephospho-CoA kinase
2vp9.1.A26.09homo-dimerHHblitsX-ray2.90Å0.320.05DEOXYNUCLEOSIDE KINASE
2vp4.1.A26.09homo-tetramerHHblitsX-ray2.20Å0.320.05DEOXYNUCLEOSIDE KINASE
2vp5.1.B26.09homo-dimerHHblitsX-ray2.30Å0.320.05DEOXYNUCLEOSIDE KINASE
3ibg.1.A36.36homo-dimerHHblitsX-ray3.20Å0.350.05ATPase, subunit of the Get complex
3kjg.2.A31.82homo-dimerHHblitsX-ray2.30Å0.330.05CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
3kjg.1.A31.82monomerHHblitsX-ray2.30Å0.330.05CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
3kji.1.A31.82homo-dimerHHblitsX-ray2.13Å0.330.05CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
3kji.2.A31.82homo-dimerHHblitsX-ray2.13Å0.330.05CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
3kjh.1.A31.82homo-dimerHHblitsX-ray1.90Å0.330.05CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
3kje.1.A31.82monomerHHblitsX-ray2.30Å0.330.05CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
3hdt.1.A21.74homo-dimerHHblitsX-ray2.79Å0.300.05putative kinase
3hdt.1.B21.74homo-dimerHHblitsX-ray2.79Å0.300.05putative kinase
3igf.1.A9.09homo-dimerHHblitsX-ray2.00Å0.260.05All4481 protein
3igf.1.B9.09homo-dimerHHblitsX-ray2.00Å0.260.05All4481 protein