Download the split DrugBank database as multiple 3D SDF files.

DrugBank01 DrugBank02 DrugBank03 DrugBank04 DrugBank05 DrugBank06 DrugBank07
DrugBank08 DrugBank09 DrugBank10 DrugBank11 DrugBank12 DrugBank13 DrugBank14

Download the split MolPort database as multiple 3D SDF files.

Each SDF file contains 1000 (MP001 to MP200) or 2000 (MP201-202 to MP465-466) 3D compounds and can be used directly for molecular docking simulations.
Each molecule maintains a protonation state at pH 7.0 (obabel).
MP001 MP002 MP003 MP004 MP005 MP006 MP007 MP008 MP009 MP010
MP011 MP012 MP013 MP014 MP015 MP016 MP017 MP018 MP019 MP020
MP021 MP022 MP023 MP024 MP025 MP026 MP027 MP028 MP029 MP030
MP031 MP032 MP033 MP034 MP035 MP036 MP037 MP038 MP039 MP040
MP041 MP042 MP043 MP044 MP045 MP046 MP047 MP048 MP049 MP050
MP051 MP052 MP053 MP054 MP055 MP056 MP057 MP058 MP059 MP060
MP061 MP062 MP063 MP064 MP065 MP066 MP067 MP068 MP069 MP070
MP071 MP072 MP073 MP074 MP075 MP076 MP077 MP078 MP079 MP080
MP081 MP082 MP083 MP084 MP085 MP086 MP087 MP088 MP089 MP090
MP091 MP092 MP093 MP094 MP095 MP096 MP097 MP098 MP099 MP100
MP101 MP102 MP103 MP104 MP105 MP106 MP107 MP108 MP109 MP110
MP111 MP112 MP113 MP114 MP115 MP116 MP117 MP118 MP119 MP120
MP121 MP122 MP123 MP124 MP125 MP126 MP127 MP128 MP129 MP130
MP131 MP132 MP133 MP134 MP135 MP136 MP137 MP138 MP139 MP140
MP141 MP142 MP143 MP144 MP145 MP146 MP147 MP148 MP149 MP150
MP151 MP152 MP153 MP154 MP155 MP156 MP157 MP158 MP159 MP160
MP161 MP162 MP163 MP164 MP165 MP166 MP167 MP168 MP169 MP170
MP171 MP172 MP173 MP174 MP175 MP176 MP177 MP178 MP179 MP180
MP181 MP182 MP183 MP184 MP185 MP186 MP187 MP188 MP189 MP190
MP191 MP192 MP193 MP194 MP195 MP196 MP197 MP198 MP199 MP200

MP201-202 MP203-204 MP205-206 MP207-208 MP209-210 MP211-212 MP213-214 MP215-216
MP217-218 MP219-220 MP221-222 MP223-224 MP225-226 MP227-228 MP229-230 MP231-232
MP233-234 MP235-236 MP237-238 MP239-240 MP241-242 MP243-244 MP245-246 MP247-248
MP249-250 MP251-252 MP253-254 MP255-256 MP257-258 MP259-260 MP261-262 MP263-264
MP265-266 MP267-268 MP269-270 MP271-272 MP273-274 MP275-276 MP277-278 MP279-280
MP281-282 MP283-284 MP285-286 MP287-288 MP289-290 MP291-292 MP293-294 MP295-296
MP297-298 MP299-300 MP301-302 MP303-304 MP305-306 MP307-308 MP309-310 MP311-312
MP313-314 MP315-316 MP317-318 MP319-320 MP321-322 MP323-324 MP325-326 MP327-328
MP329-330 MP331-332 MP333-334 MP335-336 MP337-338 MP339-340 MP341-342 MP343-344
MP345-346 MP347-348 MP349-350 MP351-352 MP353-354 MP355-356 MP357-358 MP359-360
MP361-362 MP363-364 MP365-366 MP367-368 MP369-370 MP371-372 MP373-374 MP375-376
MP377-378 MP379-380 MP381-382 MP383-384 MP385-386 MP387-388 MP389-390 MP391-392
MP393-394 MP395-396 MP397-398 MP399-400 MP401-402 MP403-404 MP405-406 MP407-408
MP409-410 MP411-412 MP413-414 MP415-416 MP417-418 MP419-420 MP421-422 MP423-424
MP425-426 MP427-428 MP429-430 MP431-432 MP433-434 MP435-436 MP437-438 MP439-440
MP457-458 MP459-460 MP461-462 MP463-464 MP465-466